Sequence Capture From Historical Museum Specimens: Maximizing Value for Population and Phylogenomic Studies
Published 2022 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Sequence Capture From Historical Museum Specimens: Maximizing Value for Population and Phylogenomic Studies
Authors
Keywords
-
Journal
Frontiers in Ecology and Evolution
Volume 10, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2022-07-22
DOI
10.3389/fevo.2022.931644
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Contextualizing enigmatic extinctions using genomic DNA from fluid-preserved museum specimens of Desmognathus salamanders
- (2022) R. Alexander Pyron et al. CONSERVATION GENETICS
- Limitations of phylogenomic data can drive inferred speciation rate shifts
- (2022) Jack M Craig et al. MOLECULAR BIOLOGY AND EVOLUTION
- DILS: Demographic Inferences with Linked Selection by using ABC
- (2021) Christelle Fraïsse et al. Molecular Ecology Resources
- Molecular Evolution of Ecological Specialisation: Genomic Insights from the Diversification of Murine Rodents
- (2021) Emily Roycroft et al. Genome Biology and Evolution
- Temperature predicts the rate of molecular evolution in Australian Eugongylinae skinks
- (2021) Jeremias Ivan et al. EVOLUTION
- Museum genomics reveals the rapid decline and extinction of Australian rodents since European settlement
- (2021) Emily Roycroft et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Limited Introgression between Rock-Wallabies with Extensive Chromosomal Rearrangements
- (2021) Sally Potter et al. MOLECULAR BIOLOGY AND EVOLUTION
- Space is the Place: Effects of Continuous Spatial Structure on Analysis of Population Genetic Data
- (2020) C. J. Battey et al. GENETICS
- Museomics identifies genetic erosion in two butterfly species across the 20th century in Finland
- (2020) Jérémy Gauthier et al. Molecular Ecology Resources
- High-throughput DNA sequencing of museum specimens sheds light on the long-missing species of the Bokermannohyla claresignata group (Anura: Hylidae: Cophomantini)
- (2020) Mariana L Lyra et al. ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY
- Museum specimens: An overlooked and valuable material for conservation genetics
- (2020) Naoyuki Nakahama ECOLOGICAL RESEARCH
- Minor allele frequency thresholds strongly affect population structure inference with genomic datasets
- (2019) Ethan Linck et al. Molecular Ecology Resources
- Parallel adaptation of rabbit populations to myxoma virus
- (2019) Joel M. Alves et al. SCIENCE
- Dense Geographic and Genomic Sampling Reveals Paraphyly and a Cryptic Lineage in a Classic Sibling Species Complex
- (2019) Ethan Linck et al. SYSTEMATIC BIOLOGY
- Temporal genomic contrasts reveal rapid evolutionary responses in an alpine mammal during recent climate change
- (2019) Ke Bi et al. PLoS Genetics
- Phylogenomics Uncovers Confidence and Conflict in the Rapid Radiation of Australo-Papuan Rodents
- (2019) Emily J Roycroft et al. SYSTEMATIC BIOLOGY
- A model with many small shifts for estimating species-specific diversification rates
- (2019) Odile Maliet et al. Nature Ecology & Evolution
- Museum specimens provide reliable SNP data for population genomic analysis of a widely distributed but threatened cockatoo species
- (2019) Kyle M. Ewart et al. Molecular Ecology Resources
- Sequence capture phylogenomics of historical ethanol‐preserved museum specimens: Unlocking the rest of the vault
- (2019) Shahan Derkarabetian et al. Molecular Ecology Resources
- More than skin and bones: Comparing extraction methods and alternative sources of DNA from avian museum specimens
- (2019) Whitney L. E. Tsai et al. Molecular Ecology Resources
- Assessing population structure in the face of isolation by distance: Are we neglecting the problem?
- (2018) Manolo F. Perez et al. DIVERSITY AND DISTRIBUTIONS
- Performance of commonly requested destructive museum samples for mammalian genomic studies
- (2018) Molly M McDonough et al. JOURNAL OF MAMMALOGY
- Next-generation museum genomics: Phylogenetic relationships among palpimanoid spiders using sequence capture techniques (Araneae: Palpimanoidea)
- (2018) Hannah M. Wood et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Squeezing water from a stone: high-throughput sequencing from a 145-year old holotype resolves (barely) a cryptic species problem in flying lizards
- (2018) Jimmy A. McGuire et al. PeerJ
- Phylogeny Estimation by Integration over Isolation with Migration Models
- (2018) Jody Hey et al. MOLECULAR BIOLOGY AND EVOLUTION
- Historical Genomes Reveal the Genomic Consequences of Recent Population Decline in Eastern Gorillas
- (2018) Tom van der Valk et al. CURRENT BIOLOGY
- Museum specimens of terrestrial vertebrates are sensitive indicators of environmental change in the Anthropocene
- (2018) C. Jonathan Schmitt et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Phylogenomic Insights into Mouse Evolution Using a Pseudoreference Approach
- (2017) Brice A.J. Sarver et al. Genome Biology and Evolution
- Recent transitions in genetic diversity and structure in the endangered semi-natural grassland butterfly, Melitaea protomedia, in Japan
- (2017) Naoyuki Nakahama et al. Insect Conservation and Diversity
- Pleistocene climatic changes drive diversification across a tropical savanna
- (2017) Sally Potter et al. MOLECULAR ECOLOGY
- Squamate Conserved Loci (SqCL): A unified set of conserved loci for phylogenomics and population genetics of squamate reptiles
- (2017) Sonal Singhal et al. Molecular Ecology Resources
- Phylogenomics using formalin-fixed and 100+ year-old intractable natural history specimens
- (2017) Sara Ruane et al. Molecular Ecology Resources
- Chromosomal Speciation in the Genomics Era: Disentangling Phylogenetic Evolution of Rock-wallabies
- (2017) Sally Potter et al. Frontiers in Genetics
- Phylogenomics at the tips: inferring lineages and their demographic history in a tropical lizard, Carlia amax
- (2016) Sally Potter et al. MOLECULAR ECOLOGY
- Resources for phylogenomic analyses of Australian terrestrial vertebrates
- (2016) Jason G. Bragg et al. Molecular Ecology Resources
- Whole-exome sequencing to analyze population structure, parental inbreeding, and familial linkage
- (2016) Aziz Belkadi et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Bioinformatic processing of RAD-seq data dramatically impacts downstream population genetic inference
- (2016) Aaron B. A. Shafer et al. Methods in Ecology and Evolution
- PHYLUCE is a software package for the analysis of conserved genomic loci
- (2015) Brant C. Faircloth BIOINFORMATICS
- Valuing museum specimens: high-throughput DNA sequencing on historical collections of New Guinea crowned pigeons (Goura)
- (2015) Guillaume Besnard et al. BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY
- Gene flow despite complex Robertsonian fusions among rock-wallaby (Petrogale) species
- (2015) Sally Potter et al. Biology Letters
- The effective founder effect in a spatially expanding population
- (2015) Benjamin M. Peter et al. EVOLUTION
- The use of museum specimens with high-throughput DNA sequencers
- (2015) Andrew S. Burrell et al. JOURNAL OF HUMAN EVOLUTION
- Sequence capture of ultraconserved elements from bird museum specimens
- (2015) John E. McCormack et al. Molecular Ecology Resources
- Exon capture phylogenomics: efficacy across scales of divergence
- (2015) Jason G. Bragg et al. Molecular Ecology Resources
- How Should Genes and Taxa be Sampled for Phylogenomic Analyses with Missing Data? An Empirical Study in Iguanian Lizards
- (2015) Jeffrey W. Streicher et al. SYSTEMATIC BIOLOGY
- Improving access to endogenous DNA in ancient bones and teeth
- (2015) Peter B. Damgaard et al. Scientific Reports
- Fixing Formalin: A Method to Recover Genomic-Scale DNA Sequence Data from Formalin-Fixed Museum Specimens Using High-Throughput Sequencing
- (2015) Sarah M. Hykin et al. PLoS One
- Taxonomy of rock-wallabies, Petrogale (Marsupialia: Macropodidae). IV. Multifaceted study of the brachyotis group identifies additional taxa
- (2014) Sally Potter et al. AUSTRALIAN JOURNAL OF ZOOLOGY
- PopGenome: An Efficient Swiss Army Knife for Population Genomic Analyses in R
- (2014) Bastian Pfeifer et al. MOLECULAR BIOLOGY AND EVOLUTION
- IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
- (2014) Lam-Tung Nguyen et al. MOLECULAR BIOLOGY AND EVOLUTION
- Likelihood Inference of Non-Constant Diversification Rates with Incomplete Taxon Sampling
- (2014) Sebastian Höhna PLoS One
- Drastic population fluctuations explain the rapid extinction of the passenger pigeon
- (2014) C.-M. Hung et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters
- (2013) Hákon Jónsson et al. BIOINFORMATICS
- DETECTING RANGE EXPANSIONS FROM GENETIC DATA
- (2013) Benjamin M. Peter et al. EVOLUTION
- Unlocking the vault: next-generation museum population genomics
- (2013) Ke Bi et al. MOLECULAR ECOLOGY
- Understanding the origin of species with genome-scale data: modelling gene flow
- (2013) Vitor Sousa et al. NATURE REVIEWS GENETICS
- Assessing the Effect of Sequencing Depth and Sample Size in Population Genetics Inferences
- (2013) Matteo Fumagalli PLoS One
- Demographic loss, genetic structure and the conservation implications for Indian tigers
- (2013) S. Mondol et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Next-Generation Museomics Disentangles One of the Largest Primate Radiations
- (2013) Katerina Guschanski et al. SYSTEMATIC BIOLOGY
- Transcriptome-based exon capture enables highly cost-effective comparative genomic data collection at moderate evolutionary scales
- (2012) Ke Bi et al. BMC GENOMICS
- Multiple biogeographical barriers identified across the monsoon tropics of northern Australia: phylogeographic analysis of thebrachyotisgroup of rock-wallabies
- (2012) SALLY POTTER et al. MOLECULAR ECOLOGY
- Temporal Patterns of Nucleotide Misincorporations and DNA Fragmentation in Ancient DNA
- (2012) Susanna Sawyer et al. PLoS One
- Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data
- (2012) Joseph K. Pickrell et al. PLoS Genetics
- Efficient cross-species capture hybridization and next-generation sequencing of mitochondrial genomes from noninvasively sampled museum specimens
- (2011) V. C. Mason et al. GENOME RESEARCH
- Inferring Speciation and Extinction Rates under Different Sampling Schemes
- (2011) S. Hohna et al. MOLECULAR BIOLOGY AND EVOLUTION
- Testing for Ancient Admixture between Closely Related Populations
- (2011) Eric Y. Durand et al. MOLECULAR BIOLOGY AND EVOLUTION
- Museum genomics: low-cost and high-accuracy genetic data from historical specimens
- (2011) KEVIN C. ROWE et al. Molecular Ecology Resources
- Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform
- (2011) Martin Kircher et al. NUCLEIC ACIDS RESEARCH
- BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments
- (2010) Alexis Criscuolo et al. BMC EVOLUTIONARY BIOLOGY
- Survival and recovery of DNA from ancient teeth and bones
- (2010) C.J. Adler et al. JOURNAL OF ARCHAEOLOGICAL SCIENCE
- Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data
- (2009) Ryan N. Gutenkunst et al. PLoS Genetics
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started