Next-Generation Museomics Disentangles One of the Largest Primate Radiations

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

(2012) R. Lanfear et al.   MOLECULAR BIOLOGY AND EVOLUTION

A High-Coverage Genome Sequence from an Archaic Denisovan Individual

(2012) M. Meyer et al.   SCIENCE

Nuclear versus mitochondrial DNA: evidence for hybridization in colobine monkeys

(2011) Christian Roos et al.   BMC EVOLUTIONARY BIOLOGY

Comparing chromosomal and mitochondrial phylogenies of the Indriidae (Primates, Lemuriformes)

(2011) Yves Rumpler et al.   CHROMOSOME RESEARCH

Efficient cross-species capture hybridization and next-generation sequencing of mitochondrial genomes from noninvasively sampled museum specimens

(2011) V. C. Mason et al.   GENOME RESEARCH

Field guide to next-generation DNA sequencers

(2011) TRAVIS C. GLENN   Molecular Ecology Resources

Calibrated Tree Priors for Relaxed Phylogenetics and Divergence Time Estimation

(2011) Joseph Heled et al.   SYSTEMATIC BIOLOGY

Prolonging the Past Counteracts the Pull of the Present: Protracted Speciation Can Explain Observed Slowdowns in Diversification

(2011) Rampal S. Etienne et al.   SYSTEMATIC BIOLOGY

A Molecular Phylogeny of Living Primates

(2011) Polina Perelman et al.   PLoS Genetics

phangorn: phylogenetic analysis in R

(2010) Klaus Peter Schliep   BIOINFORMATICS

A Complete mtDNA Genome of an Early Modern Human from Kostenki, Russia

(2010) Johannes Krause et al.   CURRENT BIOLOGY

High-throughput sequencing of complete human mtDNA genomes from the Philippines

(2010) E. D. Gunnarsdottir et al.   GENOME RESEARCH

Cenozoic vegetation, climate changes and hominid evolution in tropical Africa

(2010) Raymonde Bonnefille   GLOBAL AND PLANETARY CHANGE

Multiple fossil calibrations, nuclear loci and mitochondrial genomes provide new insight into biogeography and divergence timing for true seals (Phocidae, Pinnipedia)

(2010) Tara L. Fulton et al.   JOURNAL OF BIOGEOGRAPHY

Miocene Cercopithecoidea from the Tugen Hills, Kenya

(2010) Christopher C. Gilbert et al.   JOURNAL OF HUMAN EVOLUTION

Mitochondrial Genome Sequences Effectively Reveal the Phylogeny of Hylobates Gibbons

(2010) Yi-Chiao Chan et al.   PLoS One

Multiplexed DNA Sequence Capture of Mitochondrial Genomes Using PCR Products

(2010) Tomislav Maricic et al.   PLoS One

Natural hybridization generates mammalian lineage with species characteristics

(2010) P. A. Larsen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Draft Sequence of the Neandertal Genome

(2010) R. E. Green et al.   SCIENCE

Molecular Poltergeists: Mitochondrial DNA Copies (numts) in Sequenced Nuclear Genomes

(2010) Einat Hazkani-Covo et al.   PLoS Genetics

What traits promote male parallel dispersal in primates?

(2009) Valérie Schoof et al.   BEHAVIOUR

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Mitochondrial genomes reveal an explosive radiation of extinct and extant bears near the Miocene-Pliocene boundary

(2009) Johannes Krause et al.   BMC EVOLUTIONARY BIOLOGY

Mitochondrial phylogeography of baboons (Papio spp.) – Indication for introgressive hybridization?

(2009) Dietmar Zinner et al.   BMC EVOLUTIONARY BIOLOGY

Estimating the phylogeny and divergence times of primates using a supermatrix approach

(2009) Helen J Chatterjee et al.   BMC EVOLUTIONARY BIOLOGY

PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals

(2009) Kate E. Jones et al.   ECOLOGY

The Neandertal genome and ancient DNA authenticity

(2009) Richard E Green et al.   EMBO JOURNAL

Mitochondrial Insertions into Primate Nuclear Genomes Suggest the Use of numts as a Tool for Phylogeny

(2009) E. Hazkani-Covo   MOLECULAR BIOLOGY AND EVOLUTION

A rapid column-based ancient DNA extraction method for increased sample throughput

(2009) NADIN ROHLAND et al.   Molecular Ecology Resources

Patterns of macroevolution among Primates inferred from a supermatrix of mitochondrial and nuclear DNA

(2009) P-.H. Fabre et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Explosive Pleistocene diversification and hemispheric expansion of a “great speciator”

(2009) Robert G. Moyle et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Targeted Retrieval and Analysis of Five Neandertal mtDNA Genomes

(2009) A. W. Briggs et al.   SCIENCE

Improved base calling for the Illumina Genome Analyzer using machine learning strategies

(2009) Martin Kircher et al.   GENOME BIOLOGY

Recent developments in the MAFFT multiple sequence alignment program

(2008) K. Katoh et al.   BRIEFINGS IN BIOINFORMATICS

A Complete Neandertal Mitochondrial Genome Sequence Determined by High-Throughput Sequencing

(2008) Richard E. Green et al.   CELL

Phylogenomics of African guenons

(2008) Sibyle Moulin et al.   CHROMOSOME RESEARCH

Maximum Likelihood Inference of Geographic Range Evolution by Dispersal, Local Extinction, and Cladogenesis

(2008) Richard H. Ree et al.   SYSTEMATIC BIOLOGY

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY

Forest monkeys and Pleistocene refugia: a phylogeographic window onto the disjunct distribution of theChlorocebus lhoestispecies group

(2008) ANTHONY J. TOSI   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Behavioral variation and reproductive success of male baboons (Papio anubis ×Papio hamadryas) in a hybrid social group

(2007) Thore J. Bergman et al.   AMERICAN JOURNAL OF PRIMATOLOGY