Museum genomics: low-cost and high-accuracy genetic data from historical specimens

Whole human exome capture for high-throughput sequencing

(2010) Dae-Won Kim et al.   GENOME

A new strategy for genome assembly using short sequence reads and reduced representation libraries

(2010) A. L. Young et al.   GENOME RESEARCH

The genome sequence of the spontaneously hypertensive rat: Analysis and functional significance

(2010) S. S. Atanur et al.   GENOME RESEARCH

Validation of biological collections as a source of phenological data for use in climate change studies: a case study with the orchid Ophrys sphegodes

(2010) Karen M. Robbirt et al.   JOURNAL OF ECOLOGY

Landscape genetics of high mountain frog metapopulations

(2010) M. A. MURPHY et al.   MOLECULAR ECOLOGY

The complete mitochondrial DNA genome of an unknown hominin from southern Siberia

(2010) Johannes Krause et al.   NATURE

Genetic history of an archaic hominin group from Denisova Cave in Siberia

(2010) David Reich et al.   NATURE

Ancient human genome sequence of an extinct Palaeo-Eskimo

(2010) Morten Rasmussen et al.   NATURE

Complete mitochondrial genome of a Pleistocene jawbone unveils the origin of polar bear

(2010) C. Lindqvist et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sequencing of 50 Human Exomes Reveals Adaptation to High Altitude

(2010) X. Yi et al.   SCIENCE

Targeted Investigation of the Neandertal Genome by Array-Based Sequence Capture

(2010) H. A. Burbano et al.   SCIENCE

A Draft Sequence of the Neandertal Genome

(2010) R. E. Green et al.   SCIENCE

Next Generation Sequencing of Ancient DNA: Requirements, Strategies and Perspectives

(2010) Michael Knapp et al.   Genes

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx

(2009) Eli Meyer et al.   BMC GENOMICS

The mitochondrial genome sequence of the Tasmanian tiger (Thylacinus cynocephalus)

(2009) W. Miller et al.   GENOME RESEARCH

High definition profiling of mammalian DNA methylation by array capture and single molecule bisulfite sequencing

(2009) E. Hodges et al.   GENOME RESEARCH

Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding

(2009) K. J. McKernan et al.   GENOME RESEARCH

ABySS: A parallel assembler for short read sequence data

(2009) J. T. Simpson et al.   GENOME RESEARCH

A rapid column-based ancient DNA extraction method for increased sample throughput

(2009) NADIN ROHLAND et al.   Molecular Ecology Resources

The sequence and de novo assembly of the giant panda genome

(2009) Ruiqiang Li et al.   NATURE

Genetic analyses of historic and modern marbled murrelets suggest decoupling of migration and gene flow after habitat fragmentation

(2009) M. Z. Peery et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Targeted Retrieval and Analysis of Five Neandertal mtDNA Genomes

(2009) A. W. Briggs et al.   SCIENCE

Characterizing natural variation using next-generation sequencing technologies

(2009) Yoav Gilad et al.   TRENDS IN GENETICS

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

NATURAL SELECTION ALONG AN ENVIRONMENTAL GRADIENT: A CLASSIC CLINE IN MOUSE PIGMENTATION

(2008) Lynne M. Mullen et al.   EVOLUTION

Identification of ancient remains through genomic sequencing

(2008) M. J. Blow et al.   GENOME RESEARCH

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing

(2008) J. CRISTOBAL VERA et al.   MOLECULAR ECOLOGY

Dating of divergences within the Rattus genus phylogeny using whole mitochondrial genomes

(2008) Judith H. Robins et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Sequencing the nuclear genome of the extinct woolly mammoth

(2008) Webb Miller et al.   NATURE

Accurate whole human genome sequencing using reversible terminator chemistry

(2008) David R. Bentley et al.   NATURE

A large genome center's improvements to the Illumina sequencing system

(2008) Michael A Quail et al.   NATURE METHODS

NCBI BLAST: a better web interface

(2008) M. Johnson et al.   NUCLEIC ACIDS RESEARCH

Paleo-Eskimo mtDNA Genome Reveals Matrilineal Discontinuity in Greenland

(2008) M. T. P. Gilbert et al.   SCIENCE

Impact of a Century of Climate Change on Small-Mammal Communities in Yosemite National Park, USA

(2008) C. Moritz et al.   SCIENCE