Museomics identifies genetic erosion in two butterfly species across the 20th century in Finland

Worldwide decline of the entomofauna: A review of its drivers

(2019) Francisco Sánchez-Bayo et al.   BIOLOGICAL CONSERVATION

Temporal genomic contrasts reveal rapid evolutionary responses in an alpine mammal during recent climate change

(2019) Ke Bi et al.   PLoS Genetics

Over a century of data reveal more than 80% decline in butterflies in the Netherlands

(2019) Arco J. van Strien et al.   BIOLOGICAL CONSERVATION

Genomic impact of severe population decline in a nomadic songbird

(2019) Ross Crates et al.   PLoS One

Climate-mediated hybrid zone movement revealed with genomics, museum collection, and simulation modeling

(2018) Sean F. Ryan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Warning signals of biodiversity collapse across gradients of tropical forest loss

(2018) Fabio de Oliveira Roque et al.   Scientific Reports

Exposure of Insects to Radio-Frequency Electromagnetic Fields from 2 to 120 GHz

(2018) Arno Thielens et al.   Scientific Reports

Genomic population structure aligns with vocal dialects in Palm Cockatoos (Probosciger aterrimus); evidence for refugial late-Quaternary distribution?

(2018) Miles V. Keighley et al.   EMU

Population genomics through time provides insights into the consequences of decline and rapid demographic recovery through head-starting in a Galapagos giant tortoise

(2018) Evelyn L. Jensen et al.   Evolutionary Applications

Climate-driven declines in arthropod abundance restructure a rainforest food web

(2018) Bradford C. Lister et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Accuracy of Demographic Inferences from the Site Frequency Spectrum: The Case of the Yoruba Population

(2017) Marguerite Lapierre et al.   GENETICS

Biological annihilation via the ongoing sixth mass extinction signaled by vertebrate population losses and declines

(2017) Gerardo Ceballos et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Biodiversity losses and conservation responses in the Anthropocene

(2017) Christopher N. Johnson et al.   SCIENCE

Revisiting Adaptive Potential, Population Size, and Conservation

(2017) Ary A. Hoffmann et al.   TRENDS IN ECOLOGY & EVOLUTION

Spatial and temporal genetic dynamics of the grasshopper Oedaleus decorus revealed by museum genomics

(2017) Sarah Schmid et al.   Ecology and Evolution

Evaluating hybridization capture with RAD probes as a tool for museum genomics with historical bird specimens

(2017) Ethan B. Linck et al.   Ecology and Evolution

Accuracy of Demographic Inferences from the Site Frequency Spectrum: The Case of the Yoruba Population

(2017) Marguerite Lapierre et al.   GENETICS

Genetic effects on life-history traits in the Glanville fritillary butterfly

(2017) Anne Duplouy et al.   PeerJ

More than 75 percent decline over 27 years in total flying insect biomass in protected areas

(2017) Caspar A. Hallmann et al.   PLoS One

Centrifuge: rapid and sensitive classification of metagenomic sequences

(2016) Daehwan Kim et al.   GENOME RESEARCH

Characterizing restriction enzyme-associated loci in historic ragweed (Ambrosia artemisiifolia) voucher specimens using custom-designed RNA probes

(2016) Fátima Sánchez Barreiro et al.   Molecular Ecology Resources

RADcap: sequence capture of dual-digest RADseq libraries with identifiable duplicates and reduced missing data

(2016) Sandra L. Hoffberg et al.   Molecular Ecology Resources

Sequence capture using RAD probes clarifies phylogenetic relationships and species boundaries in Primula sect. Auricula

(2016) F.C. Boucher et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Predictable allele frequency changes due to habitat fragmentation in the Glanville fritillary butterfly

(2016) Toby Fountain et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bioinformatic processing of RAD-seq data dramatically impacts downstream population genetic inference

(2016) Aaron B. A. Shafer et al.   Methods in Ecology and Evolution

Hybridization Capture Using RAD Probes (hyRAD), a New Tool for Performing Genomic Analyses on Collection Specimens

(2016) Tomasz Suchan et al.   PLoS One

Temporal Dynamics of Avian Populations during Pleistocene Revealed by Whole-Genome Sequences

(2015) Krystyna Nadachowska-Brzyska et al.   CURRENT BIOLOGY

RAD Capture (Rapture): Flexible and Efficient Sequence-Based Genotyping

(2015) O. A. Ali et al.   GENETICS

The use of museum specimens with high-throughput DNA sequencers

(2015) Andrew S. Burrell et al.   JOURNAL OF HUMAN EVOLUTION

Reconstructing ancient genomes and epigenomes

(2015) Ludovic Orlando et al.   NATURE REVIEWS GENETICS

Human population dynamics in Europe over the Last Glacial Maximum

(2015) Miikka Tallavaara et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Restriction site-associated DNA sequencing, genotyping error estimation andde novoassembly optimization for population genetic inference

(2014) A. Mastretta-Yanes et al.   Molecular Ecology Resources

Sequencing Degraded DNA from Non-Destructively Sampled Museum Specimens for RAD-Tagging and Low-Coverage Shotgun Phylogenetics

(2014) Mandy Man-Ying Tin et al.   PLoS One

dDocent: a RADseq, variant-calling pipeline designed for population genomics of non-model organisms

(2014) Jonathan B. Puritz et al.   PeerJ

mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters

(2013) Hákon Jónsson et al.   BIOINFORMATICS

Forest bolsters bird abundance, pest control and coffee yield

(2013) Daniel S. Karp et al.   ECOLOGY LETTERS

Mantel test in population genetics

(2013) José Alexandre F. Diniz-Filho et al.   GENETICS AND MOLECULAR BIOLOGY

Ancient DNA Damage

(2013) J. Dabney et al.   Cold Spring Harbor Perspectives in Biology

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Improving ancient DNA read mapping against modern reference genomes

(2012) Mikkel Schubert et al.   BMC GENOMICS

Predicting present and future intra-specific genetic structure through niche hindcasting across 24 millennia

(2012) Anahí Espíndola et al.   ECOLOGY LETTERS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

The development of a digitising service centre for natural history collections

(2012) Hannu Saarenmaa et al.   ZooKeys

Reconstructing eight decades of genetic variation in an isolated Danish population of the large blue butterfly Maculinea arion

(2011) Line V Ugelvig et al.   BMC EVOLUTIONARY BIOLOGY

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

Conservation genetics of population bottlenecks: the role of chance, selection, and history

(2010) Juan L. Bouzat   CONSERVATION GENETICS

Global warming will affect the genetic diversity and uniqueness of Lycaena helle populations

(2010) JAN CHRISTIAN HABEL et al.   GLOBAL CHANGE BIOLOGY

Survival of the endangered butterfly Lycaena helle in a fragmented environment: Genetic analyses over 15 years

(2010) Jan C. Habel et al.   JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH

Spatially explicit Bayesian clustering models in population genetics

(2010) OLIVIER FRANÇOIS et al.   Molecular Ecology Resources

Approximate Bayesian Computation (ABC) in practice

(2010) Katalin Csilléry et al.   TRENDS IN ECOLOGY & EVOLUTION

VarScan: variant detection in massively parallel sequencing of individual and pooled samples

(2009) Daniel C. Koboldt et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Biological collections and ecological/environmental research: a review, some observations and a look to the future

(2009) Graham H. Pyke et al.   BIOLOGICAL REVIEWS

Resolving the evolution of extant and extinct ruminants with high-throughput phylogenomics

(2009) J. E. Decker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Research on inbreeding in the ‘omic’ era

(2009) Torsten N. Kristensen et al.   TRENDS IN ECOLOGY & EVOLUTION