Phylogenomics using formalin-fixed and 100+ year-old intractable natural history specimens

Visual Pigments, Ocular Filters and the Evolution of Snake Vision

(2016) Bruno F. Simões et al.   MOLECULAR BIOLOGY AND EVOLUTION

Natural history collections as windows on evolutionary processes

(2016) Michael W. Holmes et al.   MOLECULAR ECOLOGY

High-throughput SNP genotyping of historical and modern samples of five bird species via sequence capture of ultraconserved elements

(2016) Haw Chuan Lim et al.   Molecular Ecology Resources

Phylogenomic analyses reveal novel relationships among snake families

(2016) Jeffrey W. Streicher et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Comparison of Target-Capture and Restriction-Site Associated DNA Sequencing for Phylogenomics: A Test in Cardinalid Tanagers (Aves, Genus:Piranga)

(2016) Joseph D. Manthey et al.   SYSTEMATIC BIOLOGY

Sequence Capture versus Restriction Site Associated DNA Sequencing for Shallow Systematics

(2016) Michael G. Harvey et al.   SYSTEMATIC BIOLOGY

Snake evolution in Melanesia: origin of the Hydrophiinae (Serpentes, Elapidae), and the evolutionary history of the enigmatic New Guinean elapidToxicocalamus

(2016) Jason L. Strickland et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

PHYLUCE is a software package for the analysis of conserved genomic loci

(2015) Brant C. Faircloth   BIOINFORMATICS

Avoiding Missing Data Biases in Phylogenomic Inference: An Empirical Study in the Landfowl (Aves: Galliformes)

(2015) Peter A. Hosner et al.   MOLECULAR BIOLOGY AND EVOLUTION

Sequence capture of ultraconserved elements from bird museum specimens

(2015) John E. McCormack et al.   Molecular Ecology Resources

Fixing Formalin: A Method to Recover Genomic-Scale DNA Sequence Data from Formalin-Fixed Museum Specimens Using High-Throughput Sequencing

(2015) Sarah M. Hykin et al.   PLoS One

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

An Extensive Evaluation of Read Trimming Effects on Illumina NGS Data Analysis

(2013) Cristian Del Fabbro et al.   PLoS One

The Burmese python genome reveals the molecular basis for extreme adaptation in snakes

(2013) T. A. Castoe et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ultraconserved Elements Anchor Thousands of Genetic Markers Spanning Multiple Evolutionary Timescales

(2012) Brant C. Faircloth et al.   SYSTEMATIC BIOLOGY

The genome of the green anole lizard and a comparative analysis with birds and mammals

(2011) Jessica Alföldi et al.   NATURE

DNA mini-barcoding: An approach for forensic identification of some endangered Indian snake species

(2010) Bhawna Dubey et al.   Forensic Science International-Genetics

ABySS: A parallel assembler for short read sequence data

(2009) J. T. Simpson et al.   GENOME RESEARCH

Limited copy number - high resolution melting (LCN-HRM) enables the detection and identification by sequencing of low level mutations in cancer biopsies

(2009) Hongdo Do et al.   Molecular Cancer