Fixing Formalin: A Method to Recover Genomic-Scale DNA Sequence Data from Formalin-Fixed Museum Specimens Using High-Throughput Sequencing
Published 2015 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Fixing Formalin: A Method to Recover Genomic-Scale DNA Sequence Data from Formalin-Fixed Museum Specimens Using High-Throughput Sequencing
Authors
Keywords
-
Journal
PLoS One
Volume 10, Issue 10, Pages e0141579
Publisher
Public Library of Science (PLoS)
Online
2015-10-28
DOI
10.1371/journal.pone.0141579
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Library construction for ancient genomics: Single strand or double strand?
- (2016) E. Andrew Bennett et al. BIOTECHNIQUES
- Dramatic reduction of sequence artefacts from DNA isolated from formalin-fixed cancer biopsies by treatment with uracil-DNA glycosylase.
- (2015) Hongdo Do et al. Oncotarget
- DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly
- (2014) Ilari Scheinin et al. GENOME RESEARCH
- A Gateway for Phylogenetic Analysis Powered by Grid Computing Featuring GARLI 2.0
- (2014) Adam L. Bazinet et al. SYSTEMATIC BIOLOGY
- Comparison of protocols for DNA extraction from long-term preserved formalin fixed tissues
- (2013) Stefan Paireder et al. ANALYTICAL BIOCHEMISTRY
- De novotranscriptomic analyses for non-model organisms: an evaluation of methods across a multi-species data set
- (2013) Sonal Singhal Molecular Ecology Resources
- Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA
- (2013) Marie-Theres Gansauge et al. Nature Protocols
- CD-HIT: accelerated for clustering the next-generation sequencing data
- (2012) Limin Fu et al. BIOINFORMATICS
- A reconsideration of Gallicolumba (Aves: Columbidae) relationships using fresh source material reveals pseudogenes, chimeras, and a novel phylogenetic hypothesis
- (2012) Robert G. Moyle et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Temporal Patterns of Nucleotide Misincorporations and DNA Fragmentation in Ancient DNA
- (2012) Susanna Sawyer et al. PLoS One
- Nuclear DNA from the extinct Passenger Pigeon (Ectopistes migratorius) confirms a single origin of New World pigeons
- (2011) Tara L. Fulton et al. ANNALS OF ANATOMY-ANATOMISCHER ANZEIGER
- Targeted high throughput sequencing in clinical cancer Settings: formaldehyde fixed-paraffin embedded (FFPE) tumor tissues, input amount and tumor heterogeneity
- (2011) Martin Kerick et al. BMC Medical Genomics
- Illumina whole-genome complementary DNA–mediated annealing, selection, extension and ligation platform: assessing its performance in formalin-fixed, paraffin-embedded samples and identifying invasion pattern–related genes in oral squamous cell carcinoma
- (2011) Olivier Loudig et al. HUMAN PATHOLOGY
- Museum genomics: low-cost and high-accuracy genetic data from historical specimens
- (2011) KEVIN C. ROWE et al. Molecular Ecology Resources
- Optimal enzymes for amplifying sequencing libraries
- (2011) Michael A Quail et al. NATURE METHODS
- A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species
- (2011) Robert J. Elshire et al. PLoS One
- Major global radiation of corvoid birds originated in the proto-Papuan archipelago
- (2011) K. A. Jonsson et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Shaping of Modern Human Immune Systems by Multiregional Admixture with Archaic Humans
- (2011) L. Abi-Rached et al. SCIENCE
- Ancient human genome sequence of an extinct Palaeo-Eskimo
- (2010) Morten Rasmussen et al. NATURE
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- ABySS: A parallel assembler for short read sequence data
- (2009) J. T. Simpson et al. GENOME RESEARCH
- Direct multiplex sequencing (DMPS)--a novel method for targeted high-throughput sequencing of ancient and highly degraded DNA
- (2009) M. Stiller et al. GENOME RESEARCH
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Explosive avian radiations and multi-directional dispersal across Wallacea: Evidence from the Campephagidae and other Crown Corvida (Aves)
- (2008) Knud A. Jønsson et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started