Valuing museum specimens: high-throughput DNA sequencing on historical collections of New Guinea crowned pigeons (Goura)

Capturing protein-coding genes across highly divergent species

(2016) Chenhong Li et al.   BIOTECHNIQUES

The mysterious Spotted Green Pigeon and its relation to the Dodo and its kindred

(2014) Tim H Heupink et al.   BMC EVOLUTIONARY BIOLOGY

Fast assembly of the mitochondrial genome of a plant parasitic nematode (Meloidogyne graminicola) using next generation sequencing

(2014) Guillaume Besnard et al.   COMPTES RENDUS BIOLOGIES

Shotgun assembly of the assassin bug Brontostoma colossus mitochondrial genome (Heteroptera, Reduviidae)

(2014) Arthur Kocher et al.   GENE

From museums to genomics: old herbarium specimens shed light on a C3 to C4 transition

(2014) Guillaume Besnard et al.   JOURNAL OF EXPERIMENTAL BOTANY

Cost-effective enrichment hybridization capture of chloroplast genomes at deep multiplexing levels for population genetics and phylogeography studies

(2014) Cédric Mariac et al.   Molecular Ecology Resources

Drastic population fluctuations explain the rapid extinction of the passenger pigeon

(2014) C.-M. Hung et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evidence of taxon cycles in an Indo-Pacific passerine bird radiation (Aves: Pachycephala)

(2014) K. A. Jonsson et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Phylogenomics and taxonomy of Lecomtelleae (Poaceae), an isolated panicoid lineage from Madagascar

(2013) Guillaume Besnard et al.   ANNALS OF BOTANY

Contemporary genetic structure of an endemic freshwater turtle reflects Miocene orogenesis of New Guinea

(2013) Arthur Georges et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Unlocking the vault: next-generation museum population genomics

(2013) Ke Bi et al.   MOLECULAR ECOLOGY

Mass production of SNP markers in a nonmodel passerine bird through RAD sequencing and contig mapping to the zebra finch genome

(2013) Yann X. C. Bourgeois et al.   Molecular Ecology Resources

The De Novo Assembly of Mitochondrial Genomes of the Extinct Passenger Pigeon (Ectopistes migratorius) with Next Generation Sequencing

(2013) Chih-Ming Hung et al.   PLoS One

Genomic Treasure Troves: Complete Genome Sequencing of Herbarium and Insect Museum Specimens

(2013) Martijn Staats et al.   PLoS One

Genomic Diversity and Evolution of the Head Crest in the Rock Pigeon

(2013) M. D. Shapiro et al.   SCIENCE

Next-Generation Museomics Disentangles One of the Largest Primate Radiations

(2013) Katerina Guschanski et al.   SYSTEMATIC BIOLOGY

A wide geographical survey of mitochondrial DNA variation in the great spotted woodpecker complex,Dendrocopos major(Aves: Picidae)

(2012) Utku Perktaş et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

A reconsideration of Gallicolumba (Aves: Columbidae) relationships using fresh source material reveals pseudogenes, chimeras, and a novel phylogenetic hypothesis

(2012) Robert G. Moyle et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

MITOS: Improved de novo metazoan mitochondrial genome annotation

(2012) Matthias Bernt et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Ancient DNA Analyses Reveal Contrasting Phylogeographic Patterns amongst Kiwi (Apteryx spp.) and a Recently Extinct Lineage of Spotted Kiwi

(2012) Lara D. Shepherd et al.   PLoS One

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Navigating the tip of the genomic iceberg: Next-generation sequencing for plant systematics

(2011) Shannon C. K. Straub et al.   AMERICAN JOURNAL OF BOTANY

A Passerine Bird's Evolution Corroborates the Geologic History of the Island of New Guinea

(2011) Kristy Deiner et al.   PLoS One

Characterization of the complete mitochondrial genome of the Rock pigeon, Columba livia (Columbiformes: Columbidae)

(2010) X.Z. Kan et al.   GENETICS AND MOLECULAR RESEARCH

The flight of the Passenger Pigeon: Phylogenetics and biogeographic history of an extinct species

(2010) Kevin P. Johnson et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A Gift from the New World? The West African Crop Cucumeropsis mannii and the American Posadaea sphaerocarpa (Cucurbitaceae) are the Same Species

(2010) Hanno Schaefer et al.   SYSTEMATIC BOTANY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Resolving the evolution of extant and extinct ruminants with high-throughput phylogenomics

(2009) J. E. Decker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DNA from herbarium specimens settles a controversy about origins of the European potato

(2008) Mercedes Ames et al.   AMERICAN JOURNAL OF BOTANY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH