More than skin and bones: Comparing extraction methods and alternative sources of DNA from avian museum specimens

Avian mitochondrial genomes retrieved from museum eggshell

(2019) Alicia Grealy et al.   Molecular Ecology Resources

Genetic structure and the history of chub in the Alvord Basin

(2019) Christian T. Smith et al.   CONSERVATION GENETICS

Consideration of sample source for establishing reliable genetic microsatellite data from mammalian carnivore specimens held in natural history collections

(2019) Robert C Lonsinger et al.   JOURNAL OF MAMMALOGY

Museum specimens indicate genetic erosion in an endangered lizard

(2018) Luca Cornetti et al.   AMPHIBIA-REPTILIA

Next-generation museum genomics: Phylogenetic relationships among palpimanoid spiders using sequence capture techniques (Araneae: Palpimanoidea)

(2018) Hannah M. Wood et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Squeezing water from a stone: high-throughput sequencing from a 145-year old holotype resolves (barely) a cryptic species problem in flying lizards

(2018) Jimmy A. McGuire et al.   PeerJ

Extraction of highly degraded DNA from ancient bones, teeth and sediments for high-throughput sequencing

(2018) Nadin Rohland et al.   Nature Protocols

A Simple and Efficient Method of Extracting DNA from Aged Bones and Teeth

(2017) Qiqi Liu et al.   JOURNAL OF FORENSIC SCIENCES

Phylogenomics using formalin-fixed and 100+ year-old intractable natural history specimens

(2017) Sara Ruane et al.   Molecular Ecology Resources

Evaluating hybridization capture with RAD probes as a tool for museum genomics with historical bird specimens

(2017) Ethan B. Linck et al.   Ecology and Evolution

Genomic approaches to understanding population divergence and speciation in birds

(2016) David P. L. Toews et al.   AUK

Comparison of two silica-based extraction methods for DNA isolation from bones

(2016) Jessica Rothe et al.   Legal Medicine

Natural history collections as windows on evolutionary processes

(2016) Michael W. Holmes et al.   MOLECULAR ECOLOGY

Complete mitochondrial genomes of eleven extinct or possibly extinct bird species

(2016) Jarl A. Anmarkrud et al.   Molecular Ecology Resources

RADcap: sequence capture of dual-digest RADseq libraries with identifiable duplicates and reduced missing data

(2016) Sandra L. Hoffberg et al.   Molecular Ecology Resources

Comparison of two silica-based extraction methods for DNA isolation from bones

(2016) Jessica Rothe et al.   Legal Medicine

Hybridization Capture Using RAD Probes (hyRAD), a New Tool for Performing Genomic Analyses on Collection Specimens

(2016) Tomasz Suchan et al.   PLoS One

Valuing museum specimens: high-throughput DNA sequencing on historical collections of New Guinea crowned pigeons (Goura)

(2015) Guillaume Besnard et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

The use of museum specimens with high-throughput DNA sequencers

(2015) Andrew S. Burrell et al.   JOURNAL OF HUMAN EVOLUTION

In-solution hybridization for mammalian mitogenome enrichment: pros, cons and challenges associated with multiplexing degraded DNA

(2015) Melissa T. R. Hawkins et al.   Molecular Ecology Resources

Sequence capture of ultraconserved elements from bird museum specimens

(2015) John E. McCormack et al.   Molecular Ecology Resources

Comparing the performance of three ancient DNA extraction methods for high-throughput sequencing

(2015) Cristina Gamba et al.   Molecular Ecology Resources

Impacts of degraded DNA on restriction enzyme associated DNA sequencing (RADSeq)

(2015) Carly F. Graham et al.   Molecular Ecology Resources

Incorporating evolutionary history into conservation planning in biodiversity hotspots

(2015) S. Buerki et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Fixing Formalin: A Method to Recover Genomic-Scale DNA Sequence Data from Formalin-Fixed Museum Specimens Using High-Throughput Sequencing

(2015) Sarah M. Hykin et al.   PLoS One

The future of ancient DNA: Technical advances and conceptual shifts

(2014) Michael Hofreiter et al.   BIOESSAYS

One of the key characteristics of ancient DNA, low copy number, may be a product of its extraction

(2014) Jodi Lynn Barta et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE

Sequencing Degraded DNA from Non-Destructively Sampled Museum Specimens for RAD-Tagging and Low-Coverage Shotgun Phylogenetics

(2014) Mandy Man-Ying Tin et al.   PLoS One

Capture and Amplification by Tailing and Switching (CATS)

(2014) Andrey Turchinovich et al.   RNA Biology

The relevance of time series in molecular ecology and conservation biology

(2013) Jan C. Habel et al.   BIOLOGICAL REVIEWS

Unlocking the vault: next-generation museum population genomics

(2013) Ke Bi et al.   MOLECULAR ECOLOGY

Genomic Treasure Troves: Complete Genome Sequencing of Herbarium and Insect Museum Specimens

(2013) Martijn Staats et al.   PLoS One

Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments

(2013) J. Dabney et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture

(2012) N. Rohland et al.   GENOME RESEARCH

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

Evaluating the Impact of Post-Mortem Damage in Ancient DNA: A Theoretical Approach

(2011) Martyna Molak et al.   JOURNAL OF MOLECULAR EVOLUTION

Target-enrichment strategies for next-generation sequencing

(2010) Lira Mamanova et al.   NATURE METHODS

Fossil avian eggshell preserves ancient DNA

(2010) C. L. Oskam et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A Draft Sequence of the Neandertal Genome

(2010) R. E. Green et al.   SCIENCE

Next Generation Sequencing of Ancient DNA: Requirements, Strategies and Perspectives

(2010) Michael Knapp et al.   Genes

Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing

(2009) Andreas Gnirke et al.   NATURE BIOTECHNOLOGY

Removal of deaminated cytosines and detection of in vivo methylation in ancient DNA

(2009) Adrian W. Briggs et al.   NUCLEIC ACIDS RESEARCH

DNA content and distribution in ancient feathers and potential to reconstruct the plumage of extinct avian taxa

(2009) N. J. Rawlence et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Effect of Ancient DNA Damage on Inferences of Demographic Histories

(2008) E. Axelsson et al.   MOLECULAR BIOLOGY AND EVOLUTION