Protist Diversity and Metabolic Strategy in Freshwater Lakes Are Shaped by Trophic State and Watershed Land Use on a Continental Scale

Comparing microscopy and DNA metabarcoding techniques for identifying cyanobacteria assemblages across hundreds of lakes

(2022) Paul W. MacKeigan et al.   HARMFUL ALGAE

CARD-FISH in the Sequencing Era: Opening a New Universe of Protistan Ecology

(2021) Kasia Piwosz et al.   Frontiers in Microbiology

Bacterial and archaeal symbioses with protists

(2021) Filip Husnik et al.   CURRENT BIOLOGY

Multi‐scale biodiversity analyses identify the importance of continental watersheds in shaping lake zooplankton biogeography

(2021) Cindy Paquette et al.   JOURNAL OF BIOGEOGRAPHY

Global acceleration of lake sediment accumulation rates associated with recent human population growth and land-use changes

(2021) Alexandre Baud et al.   JOURNAL OF PALEOLIMNOLOGY

Widespread deoxygenation of temperate lakes

(2021) Stephen F. Jane et al.   NATURE

The occurrence of potentially pathogenic fungi and protists in Canadian lakes predicted using geomatics, in situ and satellite-derived variables: Towards a tele-epidemiological approach

(2021) Anaïs Oliva et al.   WATER RESEARCH

Using null models to compare bacterial and microeukaryotic metacommunity assembly under shifting environmental conditions

(2020) Máté Vass et al.   Scientific Reports

The global-scale distributions of soil protists and their contributions to belowground systems

(2020) Angela M. Oliverio et al.   Science Advances

Factors shaping community patterns of protists and bacteria on a European scale

(2020) Christina Bock et al.   ENVIRONMENTAL MICROBIOLOGY

Lakes at Risk of Chloride Contamination

(2020) Hilary A. Dugan et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Disentangling the mechanisms shaping the surface ocean microbiota

(2020) Ramiro Logares et al.   Microbiome

Anthropogenic alteration of nutrient supply increases the global freshwater carbon sink

(2020) N. J. Anderson et al.   Science Advances

Phytoplankton and anthropogenic changes in pelagic environments

(2020) Nico Salmaso et al.   HYDROBIOLOGIA

The balance between deterministic and stochastic processes in structuring lake bacterioplankton community over time

(2020) Pablo Aguilar et al.   MOLECULAR ECOLOGY

Assessing the response of micro-eukaryotic diversity to the Great Acceleration using lake sedimentary DNA

(2020) François Keck et al.   Nature Communications

Lakes in the era of global change: moving beyond single‐lake thinking in maintaining biodiversity and ecosystem services

(2020) Jani Heino et al.   BIOLOGICAL REVIEWS

The role of phosphorus and nitrogen on chlorophyll a: Evidence from hundreds of lakes

(2020) Zhongyao Liang et al.   WATER RESEARCH

Protist taxonomic and functional diversity in soil, freshwater and marine ecosystems

(2020) David Singer et al.   ENVIRONMENT INTERNATIONAL

Expanding ecological assessment by integrating microorganisms into routine freshwater biomonitoring

(2020) M. Sagova-Mareckova et al.   WATER RESEARCH

Eutrophication will increase methane emissions from lakes and impoundments during the 21st century

(2019) Jake J. Beaulieu et al.   Nature Communications

Environmental drivers of mixotrophs in boreal lakes

(2019) Truls Hveem Hansson et al.   LIMNOLOGY AND OCEANOGRAPHY

Coupling between taxonomic and functional diversity in protistan coastal communities

(2019) Pierre Ramond et al.   ENVIRONMENTAL MICROBIOLOGY

Ectosymbiotic bacteria at the origin of magnetoreception in a marine protist

(2019) Caroline L. Monteil et al.   Nature Microbiology

Contrasting mixotrophic lifestyles reveal different ecological niches in two closely related marine protists

(2019) Susanne Wilken et al.   JOURNAL OF PHYCOLOGY

Global Trends in Marine Plankton Diversity across Kingdoms of Life

(2019) Federico M. Ibarbalz et al.   CELL

The planktonic protist interactome: where do we stand after a century of research?

(2019) Marit F. Markussen Bjorbækmo et al.   ISME Journal

Marked changes in diversity and relative activity of picoeukaryotes with depth in the world ocean

(2019) Caterina R. Giner et al.   ISME Journal

The NSERC Canadian Lake Pulse Network: A national assessment of lake health providing science for water management in a changing climate

(2019) Yannick Huot et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Cryptophyta as major bacterivores in freshwater summer plankton

(2018) Vesna Grujcic et al.   ISME Journal

High planktonic diversity in mountain lakes contains similar contributions of autotrophic, heterotrophic and parasitic eukaryotic life forms

(2018) Rüdiger Ortiz-Álvarez et al.   Scientific Reports

Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes

(2018) Sina M. Adl et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Viruses of Eukaryotic Algae: Diversity, Methods for Detection, and Future Directions

(2018) Samantha Coy et al.   Viruses-Basel

Emerging threats and persistent conservation challenges for freshwater biodiversity

(2018) Andrea J. Reid et al.   BIOLOGICAL REVIEWS

Quantifying long-term recurrence in planktonic microbial eukaryotes

(2018) Caterina R. Giner et al.   MOLECULAR ECOLOGY

Tracking a century of changes in microbial eukaryotic diversity in lakes driven by nutrient enrichment and climate warming

(2017) Eric Capo et al.   ENVIRONMENTAL MICROBIOLOGY

Primary producers or consumers? Increasing phytoplankton bacterivory along a gradient of lake warming and browning

(2017) Susanne Wilken et al.   LIMNOLOGY AND OCEANOGRAPHY

Embracing the unknown: disentangling the complexities of the soil microbiome

(2017) Noah Fierer   NATURE REVIEWS MICROBIOLOGY

Parasites dominate hyperdiverse soil protist communities in Neotropical rainforests

(2017) Frédéric Mahé et al.   Nature Ecology & Evolution

Homogenization of lake cyanobacterial communities over a century of climate change and eutrophication

(2017) Marie-Eve Monchamp et al.   Nature Ecology & Evolution

SoilGrids250m: Global gridded soil information based on machine learning

(2017) Tomislav Hengl et al.   PLoS One

Environmental heterogeneity among lakes promotes hyper β-diversity across phytoplankton communities

(2016) Selma Maloufi et al.   FRESHWATER BIOLOGY

Influence of lake trophic conditions on the dominant mixotrophic algal assemblages

(2016) Juan F. Saad et al.   JOURNAL OF PLANKTON RESEARCH

Long-term dynamics in microbial eukaryotes communities: a palaeolimnological view based on sedimentary DNA

(2016) Eric Capo et al.   MOLECULAR ECOLOGY

Microbial eukaryote plankton communities of high-mountain lakes from three continents exhibit strong biogeographic patterns

(2016) Sabine Filker et al.   MOLECULAR ECOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Probing the evolution, ecology and physiology of marine protists using transcriptomics

(2016) David A. Caron et al.   NATURE REVIEWS MICROBIOLOGY

Importance of mixotrophic bacterivory can be predicted by light and loss rates

(2016) Robert Fischer et al.   OIKOS

Estimating the volume and age of water stored in global lakes using a geo-statistical approach

(2016) Mathis Loïc Messager et al.   Nature Communications

Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing

(2015) Ramon Massana et al.   ENVIRONMENTAL MICROBIOLOGY

Rapid and highly variable warming of lake surface waters around the globe

(2015) Catherine M. O'Reilly et al.   GEOPHYSICAL RESEARCH LETTERS

Rethinking the marine carbon cycle: Factoring in the multifarious lifestyles of microbes

(2015) A. Z. Worden et al.   SCIENCE

Eukaryotic plankton diversity in the sunlit ocean

(2015) C. de Vargas et al.   SCIENCE

Determinants of community structure in the global plankton interactome

(2015) G. Lima-Mendez et al.   SCIENCE

FactoMineR: AnRPackage for Multivariate Analysis

(2015) Sébastien Lê et al.   Journal of Statistical Software

Land Use and Climate Variability Amplify Carbon, Nutrient, and Contaminant Pulses: A Review with Management Implications

(2014) Sujay S. Kaushal et al.   JOURNAL OF THE AMERICAN WATER RESOURCES ASSOCIATION

Assemblage Time Series Reveal Biodiversity Change but Not Systematic Loss

(2014) M. Dornelas et al.   SCIENCE

Communities of microbial eukaryotes in the mammalian gut within the context of environmental eukaryotic diversity

(2014) Laura Wegener Parfrey et al.   Frontiers in Microbiology

Phylogenetic generalised dissimilarity modelling: a new approach to analysing and predicting spatial turnover in the phylogenetic composition of communities

(2013) Dan F. Rosauer et al.   ECOGRAPHY

Freshwater biodiversity conservation: recent progress and future challenges

(2013) David L. Strayer et al.   JOURNAL OF THE NORTH AMERICAN BENTHOLOGICAL SOCIETY

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

(2012) Elmar Pruesse et al.   BIOINFORMATICS

Associating microbiome composition with environmental covariates using generalized UniFrac distances

(2012) Jun Chen et al.   BIOINFORMATICS

Water colour, phosphorus and alkalinity are the major determinants of the dominant phytoplankton species in European lakes

(2012) Kairi Maileht et al.   HYDROBIOLOGIA

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy

(2012) Laure Guillou et al.   NUCLEIC ACIDS RESEARCH

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Large-scale biodiversity patterns in freshwater phytoplankton

(2011) Maayke Stomp et al.   ECOLOGY

Lakes and reservoirs as regulators of carbon cycling and climate

(2011) Lars J. Tranvik et al.   LIMNOLOGY AND OCEANOGRAPHY

Picante: R tools for integrating phylogenies and ecology

(2010) S. W. Kembel et al.   BIOINFORMATICS

Geomicrobiology of Eukaryotic Microorganisms

(2010) Geoffrey M. Gadd et al.   GEOMICROBIOLOGY JOURNAL

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Eutrophication science: where do we go from here?

(2009) Val H. Smith et al.   TRENDS IN ECOLOGY & EVOLUTION

Ecological strategies of protists and their symbiotic relationships with prokaryotic microbes

(2009) Rebecca J. Gast et al.   TRENDS IN MICROBIOLOGY

Quantitative responses of lake phytoplankton to eutrophication in Northern Europe

(2008) R. Ptacnik et al.   AQUATIC ECOLOGY

A preliminary national analysis of some key characteristics of Canadian lakes

(2008) Charles K. Minns et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Lakes and streams as sentinels of environmental change in terrestrial and atmospheric processes

(2008) Craig E Williamson et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT