SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

A Comprehensive Benchmark Study of Multiple Sequence Alignment Methods: Current Challenges and Future Perspectives

(2011) Julie D. Thompson et al.   PLoS One

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Upcoming challenges for multiple sequence alignment methods in the high-throughput era

(2009) Carsten Kemena et al.   BIOINFORMATICS

Infernal 1.0: inference of RNA alignments

(2009) E. P. Nawrocki et al.   BIOINFORMATICS

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Improvements to services at the European Nucleotide Archive

(2009) Rasko Leinonen et al.   NUCLEIC ACIDS RESEARCH

Multiple protein sequence alignment

(2008) Jimin Pei   CURRENT OPINION IN STRUCTURAL BIOLOGY

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

(2008) J. R. Cole et al.   NUCLEIC ACIDS RESEARCH

Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis

(2008) A. Loytynoja et al.   SCIENCE

Proceedings of the international workshop on Ribosomal RNA technology, April 7–9, 2008, Bremen, Germany

(2008) Linda Amaral-Zettler et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY