Marked changes in diversity and relative activity of picoeukaryotes with depth in the world ocean

Mixotrophic protists display contrasted biogeographies in the global ocean

(2019) Emile Faure et al.   ISME Journal

Improved 18S rDNA amplification protocol for assessing protist diversity in oxygen-deficient marine systems

(2018) C Wylezich et al.   AQUATIC MICROBIAL ECOLOGY

Large-scale ocean connectivity and planktonic body size

(2018) Ernesto Villarino et al.   Nature Communications

Vertical Distribution of Microbial Eukaryotes From Surface to the Hadal Zone of the Mariana Trench

(2018) Zhimeng Xu et al.   Frontiers in Microbiology

Microbial Eukaryote Diversity and Activity in the Water Column of the South China Sea Based on DNA and RNA High Throughput Sequencing

(2017) Dapeng Xu et al.   Frontiers in Microbiology

Environmental Sequencing Provides Reasonable Estimates of the Relative Abundance of Specific Picoeukaryotes

(2016) Caterina R. Giner et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Marine protist associations and environmental impacts across trophic levels in the twilight zone and below

(2016) VP Edgcomb   CURRENT OPINION IN MICROBIOLOGY

Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing

(2015) Ramon Massana et al.   ENVIRONMENTAL MICROBIOLOGY

Large variability of bathypelagic microbial eukaryotic communities across the world’s oceans

(2015) Massimo C Pernice et al.   ISME Journal

Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform

(2015) Melanie Schirmer et al.   NUCLEIC ACIDS RESEARCH

Eukaryotic plankton diversity in the sunlit ocean

(2015) C. de Vargas et al.   SCIENCE

Turnover time of fluorescent dissolved organic matter in the dark global ocean

(2015) Teresa S. Catalá et al.   Nature Communications

Ubiquitous healthy diatoms in the deep sea confirm deep carbon injection by the biological pump

(2015) S. Agusti et al.   Nature Communications

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Patterns of Rare and Abundant Marine Microbial Eukaryotes

(2014) Ramiro Logares et al.   CURRENT BIOLOGY

Large mesopelagic fishes biomass and trophic efficiency in the open ocean

(2014) Xabier Irigoien et al.   Nature Communications

Microbial eukaryote diversity in the marine oxygen minimum zone off northern Chile

(2014) Darren J. Parris et al.   Frontiers in Microbiology

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

BayesHammer: Bayesian clustering for error correction in single-cell sequencing

(2013) Sergey I Nikolenko et al.   BMC GENOMICS

Mixotrophic haptophytes are key bacterial grazers in oligotrophic coastal waters

(2013) Fernando Unrein et al.   ISME Journal

Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and uses

(2013) Steven J Blazewicz et al.   ISME Journal

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

General Patterns of Diversity in Major Marine Microeukaryote Lineages

(2013) Massimo C. Pernice et al.   PLoS One

Associating microbiome composition with environmental covariates using generalized UniFrac distances

(2012) Jun Chen et al.   BIOINFORMATICS

Effect of oxygen minimum zone formation on communities of marine protists

(2012) William Orsi et al.   ISME Journal

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy

(2012) Laure Guillou et al.   NUCLEIC ACIDS RESEARCH

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Microbial oceanography of the dark ocean's pelagic realm

(2011) Javier Arístegui et al.   LIMNOLOGY AND OCEANOGRAPHY

Diversity and Vertical Distribution of Microbial Eukaryotes in the Snow, Sea Ice and Seawater Near the North Pole at the End of the Polar Night

(2011) Charles Bachy et al.   Frontiers in Microbiology

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Emerging concepts on microbial processes in the bathypelagic ocean – ecology, biogeochemistry, and genomics

(2010) Toshi Nagata et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Mesopelagic zone ecology and biogeochemistry – a synthesis

(2010) Carol Robinson et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water

(2010) THORSTEN STOECK et al.   MOLECULAR ECOLOGY

Microbial community structure in the North Pacific ocean

(2009) Mark V Brown et al.   ISME Journal

New Insights into the Diversity of Marine Picoeukaryotes

(2009) Fabrice Not et al.   PLoS One

Thresholds of hypoxia for marine biodiversity

(2008) R. Vaquer-Sunyer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA