Comparing microscopy and DNA metabarcoding techniques for identifying cyanobacteria assemblages across hundreds of lakes
Published 2022 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Comparing microscopy and DNA metabarcoding techniques for identifying cyanobacteria assemblages across hundreds of lakes
Authors
Keywords
Cyanobacteria, Microscopy, 16s rRNA gene metabarcoding, eDNA, Freshwater lakes, Trophic status, Microcystis, genotypes
Journal
HARMFUL ALGAE
Volume 113, Issue -, Pages 102187
Publisher
Elsevier BV
Online
2022-02-04
DOI
10.1016/j.hal.2022.102187
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Individual Microcystis colonies harbour distinct bacterial communities that differ by Microcystis oligotype and with time
- (2021) Derek J. Smith et al. ENVIRONMENTAL MICROBIOLOGY
- Environmental DNA for biomonitoring
- (2021) Jan Pawlowski et al. MOLECULAR ECOLOGY
- Consistency of Targeted Metatranscriptomics and Morphological Characterization of Phytoplankton Communities
- (2020) Kristiina Vuorio et al. Frontiers in Microbiology
- The Composition and Function of Microbiomes Within Microcystis Colonies Are Significantly Different Than Native Bacterial Assemblages in Two North American Lakes
- (2020) Jennifer G. Jankowiak et al. Frontiers in Microbiology
- Combining morphological and metabarcoding approaches reveals the freshwater eukaryotic phytoplankton community
- (2020) Shouliang Huo et al. Environmental Sciences Europe
- A large-scale assessment of lakes reveals a pervasive signal of land use on bacterial communities
- (2020) S. A. Kraemer et al. ISME Journal
- Updating the resolution for 16S rRNA OTUs clustering reveals the cryptic cyanobacterial genus and species
- (2020) Xiaochuang Li et al. ECOLOGICAL INDICATORS
- Calibrating Environmental DNA Metabarcoding to Conventional Surveys for Measuring Fish Species Richness
- (2020) Mary E. McElroy et al. Frontiers in Ecology and Evolution
- Morphological and molecular characterization of cyanobacterial isolates from the mouth of the Amazon River
- (2019) ELANE D. CUNHA DE OLIVEIRA et al. Phytotaxa
- Long Term Diversity and Distribution of Non-photosynthetic Cyanobacteria in Peri-Alpine Lakes
- (2019) Marie-Eve Monchamp et al. Frontiers in Microbiology
- Primer Design for an Accurate View of Picocyanobacterial Community Structure by Using High-Throughput Sequencing
- (2019) Paula Huber et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Unmasking the identity of toxigenic cyanobacteria driving a multi-toxin bloom by high-throughput sequencing of cyanotoxins genes and 16S rRNA metabarcoding
- (2019) María Cristina Casero et al. SCIENCE OF THE TOTAL ENVIRONMENT
- High-throughput DNA sequencing reveals the dominance of pico- and other filamentous cyanobacteria in an urban freshwater Lake
- (2019) Hanyan Li et al. SCIENCE OF THE TOTAL ENVIRONMENT
- The global Microcystis interactome
- (2019) Katherine V. Cook et al. LIMNOLOGY AND OCEANOGRAPHY
- Widespread global increase in intense lake phytoplankton blooms since the 1980s
- (2019) Jeff C. Ho et al. NATURE
- Diatom DNA Metabarcoding for Biomonitoring: Strategies to Avoid Major Taxonomical and Bioinformatical Biases Limiting Molecular Indices Capacities
- (2019) Kálmán Tapolczai et al. Frontiers in Ecology and Evolution
- Metabarcoding reveals a more complex cyanobacterial community than morphological identification
- (2019) XiaoChuang Li et al. ECOLOGICAL INDICATORS
- Multiannual variations in Microcystis bloom episodes – Temperature drives shift in species composition
- (2019) Shira Ninio et al. HARMFUL ALGAE
- The NSERC Canadian Lake Pulse Network: A national assessment of lake health providing science for water management in a changing climate
- (2019) Yannick Huot et al. SCIENCE OF THE TOTAL ENVIRONMENT
- Network analysis reveals succession of Microcystis genotypes accompanying distinctive microbial modules with recurrent patterns
- (2019) Seong-Jun Chun et al. WATER RESEARCH
- Temporal and spatial distribution of Microcystis biomass and genotype in bloom areas of Lake Taihu
- (2018) Dong-Xing Guan et al. CHEMOSPHERE
- Uncovering cryptic diversity of Lyngbya : the new tropical marine cyanobacterial genus Dapis (Oscillatoriales)
- (2018) Niclas Engene et al. JOURNAL OF PHYCOLOGY
- Cyanobacterial blooms
- (2018) Jef Huisman et al. NATURE REVIEWS MICROBIOLOGY
- Do we similarly assess diversity with microscopy and high-throughput sequencing? Case of microalgae in lakes
- (2018) Frédéric Rimet et al. ORGANISMS DIVERSITY & EVOLUTION
- The future of biotic indices in the ecogenomic era: Integrating (e)DNA metabarcoding in biological assessment of aquatic ecosystems
- (2018) Jan Pawlowski et al. SCIENCE OF THE TOTAL ENVIRONMENT
- Niche Separation Increases With Genetic Distance Among Bloom-Forming Cyanobacteria
- (2018) Nicolas Tromas et al. Frontiers in Microbiology
- Streams of data from drops of water: 21st century molecular microbial ecology
- (2018) Dave R. Clark et al. Wiley Interdisciplinary Reviews-Water
- The molecular ecology of Microcystis sp. blooms in the San Francisco Estuary
- (2017) Timothy G. Otten et al. ENVIRONMENTAL MICROBIOLOGY
- Exact sequence variants should replace operational taxonomic units in marker-gene data analysis
- (2017) Benjamin J Callahan et al. ISME Journal
- Taxonomy-free molecular diatom index for high-throughput eDNA biomonitoring
- (2017) Laure Apothéloz-Perret-Gentil et al. Molecular Ecology Resources
- Application of high-throughput sequencing (HTS) metabarcoding to diatom biomonitoring: Do DNA extraction methods matter?
- (2017) Valentin Vasselon et al. Freshwater Science
- Application of high-throughput sequencing (HTS) metabarcoding to diatom biomonitoring: Do DNA extraction methods matter?
- (2017) Valentin Vasselon et al. Freshwater Science
- Identification of Cyanobacteria in a Eutrophic Coastal Lagoon on the Southern Baltic Coast
- (2017) Martin Albrecht et al. Frontiers in Microbiology
- Are Oligotypes Meaningful Ecological and Phylogenetic Units? A Case Study of Microcystis in Freshwater Lakes
- (2017) Michelle A. Berry et al. Frontiers in Microbiology
- A curated database of cyanobacterial strains relevant for modern taxonomy and phylogenetic studies
- (2017) Vitor Ramos et al. Scientific Data
- Characterization of bacterial community associated with phytoplankton bloom in a eutrophic lake in South Norway using 16S rRNA gene amplicon sequence analysis
- (2017) Niranjan Nitin Parulekar et al. PLoS One
- Sedimentary DNA Reveals Cyanobacterial Community Diversity over 200 Years in Two Perialpine Lakes
- (2016) Marie-Eve Monchamp et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Blooming algae: a Canadian perspective on the rise of toxic cyanobacteria
- (2016) Frances R. Pick CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES
- A polyphasic approach for the taxonomy of cyanobacteria: principles and applications
- (2016) Jiří Komárek EUROPEAN JOURNAL OF PHYCOLOGY
- A review of the global ecology, genomics, and biogeography of the toxic cyanobacterium, Microcystis spp.
- (2016) Matthew J. Harke et al. HARMFUL ALGAE
- The dual role of nitrogen supply in controlling the growth and toxicity of cyanobacterial blooms
- (2016) Christopher J. Gobler et al. HARMFUL ALGAE
- Is metabarcoding suitable for estuarine plankton monitoring? A comparative study with microscopy
- (2016) David Abad et al. MARINE BIOLOGY
- DADA2: High-resolution sample inference from Illumina amplicon data
- (2016) Benjamin J Callahan et al. NATURE METHODS
- Acceleration of cyanobacterial dominance in north temperate-subarctic lakes during the Anthropocene
- (2015) Zofia E. Taranu et al. ECOLOGY LETTERS
- Review of the cyanobacterial genera implying planktic species after recent taxonomic revisions according to polyphasic methods: state as of 2014
- (2015) Jiří Komárek HYDROBIOLOGIA
- Microbial communities reflect temporal changes in cyanobacterial composition in a shallow ephemeral freshwater lake
- (2015) Jason Nicholas Woodhouse et al. ISME Journal
- Toxic Picoplanktonic Cyanobacteria—Review
- (2015) Natalia Jakubowska et al. Marine Drugs
- FactoMineR: AnRPackage for Multivariate Analysis
- (2015) Sébastien Lê et al. Journal of Statistical Software
- Can DNA-Based Ecosystem Assessments Quantify Species Abundance? Testing Primer Bias and Biomass—Sequence Relationships with an Innovative Metabarcoding Protocol
- (2015) Vasco Elbrecht et al. PLoS One
- Metabarcoding vs. morphological identification to assess diatom diversity in environmental studies
- (2014) Jonas Zimmermann et al. Molecular Ecology Resources
- Use of High Throughput Sequencing and Light Microscopy Show Contrasting Results in a Study of Phytoplankton Occurrence in a Freshwater Environment
- (2014) Xi Xiao et al. PLoS One
- Polyphasic identification of cyanobacterial isolates from Australia
- (2014) Elvina Lee et al. WATER RESEARCH
- A morphogenetic survey on ciliate plankton from a mountain lake pinpoints the necessity of lineage-specific barcode markers in microbial ecology
- (2013) Thorsten Stoeck et al. ENVIRONMENTAL MICROBIOLOGY
- Harmful Cyanobacterial Blooms: Causes, Consequences, and Controls
- (2013) Hans W. Paerl et al. MICROBIAL ECOLOGY
- Next-generation sequencing to inventory taxonomic diversity in eukaryotic communities: a test for freshwater diatoms
- (2013) L. Kermarrec et al. Molecular Ecology Resources
- Unveiling Distribution Patterns of Freshwater Phytoplankton by a Next Generation Sequencing Based Approach
- (2013) Alexander Eiler et al. PLoS One
- Gene copy number variation and its significance in cyanobacterial phylogeny
- (2012) Bettina E Schirrmeister et al. BMC MICROBIOLOGY
- Towards next-generation biodiversity assessment using DNA metabarcoding
- (2012) PIERRE TABERLET et al. MOLECULAR ECOLOGY
- The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
- (2012) Christian Quast et al. NUCLEIC ACIDS RESEARCH
- Incorporating 16S Gene Copy Number Information Improves Estimates of Microbial Diversity and Abundance
- (2012) Steven W. Kembel et al. PLoS Computational Biology
- The rise of harmful cyanobacteria blooms: The potential roles of eutrophication and climate change
- (2011) J.M. O’Neil et al. HARMFUL ALGAE
- Algal blooms in Ontario, Canada: Increases in reports since 1994
- (2011) Jennifer G. Winter et al. LAKE AND RESERVOIR MANAGEMENT
- Controlling harmful cyanobacterial blooms in a world experiencing anthropogenic and climatic-induced change
- (2011) Hans W. Paerl et al. SCIENCE OF THE TOTAL ENVIRONMENT
- Climate change: Links to global expansion of harmful cyanobacteria
- (2011) Hans W. Paerl et al. WATER RESEARCH
- Morphological and molecular analysis of bloom-forming Cyanobacteria in two eutrophic, shallow Mediterranean lakes
- (2010) Konstantinos Ar. Kormas et al. LIMNOLOGICA
- Evidence for a Novel Marine Harmful Algal Bloom: Cyanotoxin (Microcystin) Transfer from Land to Sea Otters
- (2010) Melissa A. Miller et al. PLoS One
- Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
- (2010) J. G. Caporaso et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Recent changes (2008) in cyanobacteria taxonomy based on a combination of molecular background with phenotype and ecological consequences (genus and species concept)
- (2009) Jiří Komárek HYDROBIOLOGIA
- Quantification of Diatom and Dinoflagellate Biomasses in Coastal Marine Seawater Samples by Real-Time PCR
- (2008) A. Godhe et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started