Factors shaping community patterns of protists and bacteria on a European scale

Ecological Differentiation in Two Major Freshwater Bacterial Taxa Along Environmental Gradients

(2020) Julia K. Nuy et al.   Frontiers in Microbiology

Factors influencing aquatic and terrestrial bacterial community assembly

(2019) Silke Langenheder et al.   Environmental Microbiology Reports

The effect of 16S rRNA region choice on bacterial community metabarcoding results

(2019) Yu. S. Bukin et al.   Scientific Data

Algae−bacteria interactions that balance the planktonic microbiome

(2019) Emilio Cirri et al.   NEW PHYTOLOGIST

Microbial Ecology of Snow Reveals Taxa-Specific Biogeographical Structure

(2019) Shawn P. Brown et al.   MICROBIAL ECOLOGY

Microbial food webs in hypertrophic fishponds: Omnivorous ciliate taxa are major protistan bacterivores

(2019) Karel Šimek et al.   LIMNOLOGY AND OCEANOGRAPHY

Interaction-Specific Changes in the Transcriptome of Polynucleobacter asymbioticus Caused by Varying Protistan Communities

(2019) Daniela Beisser et al.   Frontiers in Microbiology

Diversity and biogeography of SAR11 bacteria from the Arctic Ocean

(2019) Susanne Kraemer et al.   ISME Journal

Shifts in cell size and community composition of bacterioplankton due to grazing by heterotrophic flagellates: evidence from a marine system

(2019) MG Weinbauer et al.   AQUATIC MICROBIAL ECOLOGY

Abiotic environmental factors override phytoplankton succession in shaping both free-living and attached bacterial communities in a highland lake

(2019) Huan Wang et al.   AMB Express

Contrasting prevalence of selection and drift in the community structuring of bacteria and microbial eukaryotes

(2018) Ramiro Logares et al.   ENVIRONMENTAL MICROBIOLOGY

Phytoplankton-derived polysaccharides in the marine environment and their interactions with heterotrophic bacteria

(2018) Marco Mühlenbruch et al.   ENVIRONMENTAL MICROBIOLOGY

Cryptophyta as major bacterivores in freshwater summer plankton

(2018) Vesna Grujcic et al.   ISME Journal

The ecology and diversity of microbial eukaryotes in geothermal springs

(2018) Angela M. Oliverio et al.   ISME Journal

A Comparison of Different Ciliate Metabarcode Genes as Bioindicators for Environmental Impact Assessments of Salmon Aquaculture

(2018) Dominik Forster et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Predators and nutrient availability favor protozoa-resisting bacteria in aquatic systems

(2018) A. Andersson et al.   Scientific Reports

Cyanobacterial Community Composition and Bacteria–Bacteria Interactions Promote the Stable Occurrence of Particle-Associated Bacteria

(2018) Jason N. Woodhouse et al.   Frontiers in Microbiology

Synchrony of Eukaryotic and Prokaryotic Planktonic Communities in Three Seasonally Sampled Austrian Lakes

(2018) Christina Bock et al.   Frontiers in Microbiology

Silver stress differentially affects growth of phototrophic and heterotrophic chrysomonad flagellate populations

(2018) Christina Bock et al.   ENVIRONMENTAL POLLUTION

Differential Response of Cafeteria roenbergensis to Different Bacterial and Archaeal Prey Characteristics

(2018) Daniele De Corte et al.   MICROBIAL ECOLOGY

Are We Overestimating Protistan Diversity in Nature?

(2018) David A. Caron et al.   TRENDS IN MICROBIOLOGY

Environmental Drivers of Free-Living vs. Particle-Attached Bacterial Community Composition in the Mauritania Upwelling System

(2018) Jennifer Bachmann et al.   Frontiers in Microbiology

Competition and niche separation of pelagic bacteria in freshwater habitats

(2017) Jakob Pernthaler   ENVIRONMENTAL MICROBIOLOGY

Strain-specific consumption and transformation of alga-derived dissolved organic matter by members of the Limnohabitans -C and Polynucleobacter -B clusters of Betaproteobacteria

(2017) Karel Horňák et al.   ENVIRONMENTAL MICROBIOLOGY

Comparison of coastal phytoplankton composition estimated from the V4 and V9 regions of the 18S rRNA gene with a focus on photosynthetic groups and especially Chlorophyta

(2017) Margot Tragin et al.   ENVIRONMENTAL MICROBIOLOGY

Microdiversification in genome-streamlined ubiquitous freshwater Actinobacteria

(2017) Stefan M Neuenschwander et al.   ISME Journal

Bacterial prey food characteristics modulate community growth response of freshwater bacterivorous flagellates

(2017) Karel Šimek et al.   LIMNOLOGY AND OCEANOGRAPHY

Using null models to infer microbial co-occurrence networks

(2017) Nora Connor et al.   PLoS One

Effects of grazing, phosphorus and light on the growth rates of major bacterioplankton taxa in the coastal NW Mediterranean

(2017) Olga Sánchez et al.   Environmental Microbiology Reports

Antagonistic bacteria disrupt calcium homeostasis and immobilize algal cells

(2017) Prasad Aiyar et al.   Nature Communications

The Exometabolome of Two Model Strains of the Roseobacter Group: A Marketplace of Microbial Metabolites

(2017) Gerrit Wienhausen et al.   Frontiers in Microbiology

Ingestion rate and grazing impact by the mixotrophic ciliate Mesodinium rubrum on natural populations of marine heterotrophic bacteria in the coastal waters of Korea

(2017) Kyeong Ah Seong et al.   ALGAE

Microbial eukaryote communities exhibit robust biogeographical patterns along a gradient of Patagonian and Antarctic lakes

(2016) M. Romina Schiaffino et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterioplankton niche partitioning in the use of phytoplankton-derived dissolved organic carbon: quantity is more important than quality

(2016) Hugo Sarmento et al.   ISME Journal

Effects of Predation by Protists on Prokaryotic Community Function, Structure, and Diversity in Anaerobic Granular Sludge

(2016) Yuga Hirakata et al.   MICROBES AND ENVIRONMENTS

Trade-off between taxon diversity and functional diversity in European lake ecosystems

(2016) Lars Grossmann et al.   MOLECULAR ECOLOGY

Microbial eukaryote plankton communities of high-mountain lakes from three continents exhibit strong biogeographic patterns

(2016) Sabine Filker et al.   MOLECULAR ECOLOGY

18S rRNA V9 metabarcoding for diet characterization: a critical evaluation with two sympatric zooplanktivorous fish species

(2016) Aitor Albaina et al.   Ecology and Evolution

Prey-Specific Growth Responses of Freshwater Flagellate Communities Induced by Morphologically Distinct Bacteria from the Genus Limnohabitans

(2015) Vesna Grujčić et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genetic relationships in bipolar species of the protist ciliate, Euplotes

(2015) Graziano Di Giuseppe et al.   HYDROBIOLOGIA

The ecology of pelagic freshwater methylotrophs assessed by a high-resolution monitoring and isolation campaign

(2015) Michaela M Salcher et al.   ISME Journal

Metabolic dependencies drive species co-occurrence in diverse microbial communities

(2015) Aleksej Zelezniak et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Eukaryotic plankton diversity in the sunlit ocean

(2015) C. de Vargas et al.   SCIENCE

Potential changes in bacterial metabolism associated with increased water temperature and nutrient inputs in tropical humic lagoons

(2015) Vinicius Scofield et al.   Frontiers in Microbiology

AmpliconDuo: A Split-Sample Filtering Protocol for High-Throughput Amplicon Sequencing of Microbial Communities

(2015) Anja Lange et al.   PLoS One

The Absorption of Light in Lakes: Negative Impact of Dissolved Organic Carbon on Primary Productivity

(2014) Jan-Erik Thrane et al.   ECOSYSTEMS

Seasonal growth potential of rare lake water bacteria suggest their disproportional contribution to carbon fluxes

(2014) Stefan M. Neuenschwander et al.   ENVIRONMENTAL MICROBIOLOGY

A finely tuned symphony of factors modulates the microbial food web of a freshwater reservoir in spring

(2014) Karel SŠimek et al.   LIMNOLOGY AND OCEANOGRAPHY

Massive Regime Shifts and High Activity of Heterotrophic Bacteria in an Ice-Covered Lake

(2014) Mina Bižić-Ionescu et al.   PLoS One

Swarm: robust and fast clustering method for amplicon-based studies

(2014) Frédéric Mahé et al.   PeerJ

Interactions between specific phytoplankton and bacteria affect lake bacterial community succession

(2013) Sara F. Paver et al.   ENVIRONMENTAL MICROBIOLOGY

Impact of protist grazing on a key bacterial group for biogeochemical cycling in Baltic Sea pelagic oxic/anoxic interfaces

(2013) Ruth Anderson et al.   ENVIRONMENTAL MICROBIOLOGY

Differential freshwater flagellate community response to bacterial food quality with a focus on Limnohabitans bacteria

(2013) Karel Šimek et al.   ISME Journal

Patterns in the Composition of Microbial Communities from a Subtropical River: Effects of Environmental, Spatial and Temporal Factors

(2013) Lemian Liu et al.   PLoS One

Marine bacteria exhibit a bipolar distribution

(2013) W. J. Sul et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Carbon conversion efficiency and population dynamics of a marine algae–bacteria consortium growing on simplified synthetic digestate: First step in a bioprocess coupling algal production and anaerobic digestion

(2012) Christophe Vasseur et al.   BIORESOURCE TECHNOLOGY

PANDAseq: paired-end assembler for illumina sequences

(2012) Andre P Masella et al.   BMC BIOINFORMATICS

Algal Exudates and Stream Organic Matter Influence the Structure and Function of Denitrifying Bacterial Communities

(2012) Kathryn N. Kalscheur et al.   MICROBIAL ECOLOGY

Pole-to-pole biogeography of surface and deep marine bacterial communities

(2012) J.-F. Ghiglione et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Marine Microbes See a Sea of Gradients

(2012) R. Stocker   SCIENCE

Alga-Derived Substrates Select for Distinct Betaproteobacterial Lineages and Contribute to Niche Separation in Limnohabitans Strains

(2011) Karel Šimek et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparison of Growth Rates of Aerobic Anoxygenic Phototrophic Bacteria and Other Bacterioplankton Groups in Coastal Mediterranean Waters

(2011) Isabel Ferrera et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

Microorganisms and their roles in fundamental biogeochemical cycles

(2011) Eugene L Madsen   CURRENT OPINION IN BIOTECHNOLOGY

Rapid successions affect microbial N-acetyl-glucosamine uptake patterns during a lacustrine spring phytoplankton bloom

(2011) Ester M. Eckert et al.   ENVIRONMENTAL MICROBIOLOGY

Species sorting and neutral processes are both important during the initial assembly of bacterial communities

(2011) Silke Langenheder et al.   ISME Journal

Coherent dynamics and association networks among lake bacterioplankton taxa

(2011) Alexander Eiler et al.   ISME Journal

Nitrogen and phosphorus inputs control phytoplankton growth in eutrophic Lake Taihu, China

(2011) Hai Xu et al.   LIMNOLOGY AND OCEANOGRAPHY

Interactions of the Algicidal Bacterium Kordia algicida with Diatoms: Regulated Protease Excretion for Specific Algal Lysis

(2011) Carsten Paul et al.   PLoS One

Global patterns in the biogeography of bacterial taxa

(2010) Diana R. Nemergut et al.   ENVIRONMENTAL MICROBIOLOGY

A global network of coexisting microbes from environmental and whole-genome sequence data

(2010) S. Chaffron et al.   GENOME RESEARCH

A 2-Year Assessment of the Main Environmental Factors Driving the Free-Living Bacterial Community Structure in Lake Bourget (France)

(2010) Lyria Berdjeb et al.   MICROBIAL ECOLOGY

Temporal Patterns in Glycolate-Utilizing Bacterial Community Composition Correlate with Phytoplankton Population Dynamics in Humic Lakes

(2010) Sara F. Paver et al.   MICROBIAL ECOLOGY

Combined niche and neutral effects in a microbial wastewater treatment community

(2010) I. D. Ofiteru et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Whole-genome microarray analyses ofSynechococcus-Vibriointeractions

(2009) Vera Tai et al.   ENVIRONMENTAL MICROBIOLOGY

A small population of planktonicFlavobacteriawith disproportionally high growth during the spring phytoplankton bloom in a prealpine lake

(2009) Michael Zeder et al.   ENVIRONMENTAL MICROBIOLOGY

Spatio-temporal patterns of bacterioplankton production and community composition related to phytoplankton composition and protistan bacterivory in a dam reservoir

(2008) K Simek et al.   AQUATIC MICROBIAL ECOLOGY

Community structure of marine bacterioplankton: patterns, networks, and relationships to function

(2008) JA Fuhrman et al.   AQUATIC MICROBIAL ECOLOGY

FORWARD SELECTION OF EXPLANATORY VARIABLES

(2008) F. Guillaume Blanchet et al.   ECOLOGY

Top-down and bottom-up induced shifts in bacterial abundance, production and community composition in an experimentally divided humic lake

(2008) Hans-Peter Grossart et al.   ENVIRONMENTAL MICROBIOLOGY

Pseudomonas fluorescensHYK0210-SK09 offers species-specific biological control of winter algal blooms caused by freshwater diatomStephanodiscus hantzschii

(2008) S.W. Jung et al.   JOURNAL OF APPLIED MICROBIOLOGY