The balance between deterministic and stochastic processes in structuring lake bacterioplankton community over time

Using null models to compare bacterial and microeukaryotic metacommunity assembly under shifting environmental conditions

(2020) Máté Vass et al.   Scientific Reports

Taxonomic differences shape the responses of freshwater aerobic anoxygenic phototrophic bacterial communities to light and predation

(2020) Clara Ruiz‐González et al.   MOLECULAR ECOLOGY

Long-Term Stochasticity Combines With Short-Term Variability in Assembly Processes to Underlie Rice Paddy Sustainability

(2020) Wenjing Liu et al.   Frontiers in Microbiology

Disentangling the mechanisms shaping the surface ocean microbiota

(2020) Ramiro Logares et al.   Microbiome

Spatial, Temporal, and Phylogenetic Scales of Microbial Ecology

(2019) Joshua Ladau et al.   TRENDS IN MICROBIOLOGY

Stochastic processes shape microeukaryotic community assembly in a subtropical river across wet and dry seasons

(2019) Weidong Chen et al.   Microbiome

Microbial life under ice: Metagenome diversity and in situ activity of Verrucomicrobia in seasonally ice-covered lakes

(2018) Patricia Tran et al.   ENVIRONMENTAL MICROBIOLOGY

Contrasting prevalence of selection and drift in the community structuring of bacteria and microbial eukaryotes

(2018) Ramiro Logares et al.   ENVIRONMENTAL MICROBIOLOGY

Verrucomicrobia are prevalent in north-temperate freshwater lakes and display class-level preferences between lake habitats

(2018) Edna Chiang et al.   PLoS One

Community Assembly Processes of the Microbial Rare Biosphere

(2018) Xiu Jia et al.   TRENDS IN MICROBIOLOGY

Temporal variability of bacterioplankton is habitat driven

(2018) Ulrike Obertegger et al.   MOLECULAR ECOLOGY

Climate warming increases vertical and seasonal water temperature differences and inter-annual variability in a mountain lake

(2018) G. H. Niedrist et al.   CLIMATIC CHANGE

Exact sequence variants should replace operational taxonomic units in marker-gene data analysis

(2017) Benjamin J Callahan et al.   ISME Journal

Diversity and Cyclical Seasonal Transitions in the Bacterial Community in a Large and Deep Perialpine Lake

(2017) Nico Salmaso et al.   MICROBIAL ECOLOGY

Stochastic Community Assembly: Does It Matter in Microbial Ecology?

(2017) Jizhong Zhou et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Nearly a decade-long repeatable seasonal diversity patterns of bacterioplankton communities in the eutrophic Lake Donghu (Wuhan, China)

(2017) Qingyun Yan et al.   MOLECULAR ECOLOGY

Bacterial Community Composition and Dynamics Spanning Five Years in Freshwater Bog Lakes

(2017) Alexandra M. Linz et al.   mSphere

Under-ice availability of phytoplankton lipids is key to freshwater zooplankton winter survival

(2017) Guillaume Grosbois et al.   Scientific Reports

Ecology under lake ice

(2016) Stephanie E. Hampton et al.   ECOLOGY LETTERS

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

phylosignal: an R package to measure, test, and explore the phylogenetic signal

(2016) François Keck et al.   Ecology and Evolution

Unanticipated Geochemical and Microbial Community Structure under Seasonal Ice Cover in a Dilute, Dimictic Arctic Lake

(2016) Ursel M. E. Schütte et al.   Frontiers in Microbiology

Spatiotemporal distribution and activity patterns of bacteria from three phylogenetic groups in an oligomesotrophic lake

(2016) Michaela M. Salcher et al.   LIMNOLOGY AND OCEANOGRAPHY

Contrasting seasonal and interannual environmental drivers in bacterial communities within a large shallow lake: evidence from a seven year survey

(2015) H Tammert et al.   AQUATIC MICROBIAL ECOLOGY

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

(2015) Alma E. Parada et al.   ENVIRONMENTAL MICROBIOLOGY

Marine microbial community dynamics and their ecological interpretation

(2015) Jed A. Fuhrman et al.   NATURE REVIEWS MICROBIOLOGY

Annual periodicity in planktonic bacterial and archaeal community composition of eutrophic Lake Taihu

(2015) Junfeng Li et al.   Scientific Reports

Estimating and mapping ecological processes influencing microbial community assembly

(2015) James C. Stegen et al.   Frontiers in Microbiology

RNA Preservation Agents and Nucleic Acid Extraction Method Bias Perceived Bacterial Community Composition

(2015) Ann McCarthy et al.   PLoS One

Deterministic processes guide long-term synchronised population dynamics in replicate anaerobic digesters

(2014) Inka Vanwonterghem et al.   ISME Journal

Bacterial Community Composition in Three Freshwater Reservoirs of Different Alkalinity and Trophic Status

(2014) Marc Llirós et al.   PLoS One

Temporal Changes and Altitudinal Distribution of Aerobic Anoxygenic Phototrophs in Mountain Lakes

(2013) Zuzana Čuperová et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A meta-analysis of changes in bacterial and archaeal communities with time

(2013) Ashley Shade et al.   ISME Journal

Quantifying community assembly processes and identifying features that impose them

(2013) James C Stegen et al.   ISME Journal

Phylogenetic beta diversity in bacterial assemblages across ecosystems: deterministic versus stochastic processes

(2013) Jianjun Wang et al.   ISME Journal

The under-ice microbiome of seasonally frozen lakes

(2013) Stefan Bertilsson et al.   LIMNOLOGY AND OCEANOGRAPHY

Stochastic and deterministic assembly processes in subsurface microbial communities

(2012) James C Stegen et al.   ISME Journal

Spatial and temporal scales of aquatic bacterial beta diversity

(2012) Stuart E. Jones et al.   Frontiers in Microbiology

Temporal changes in the dominance of major planktonic bacterial groups in an alpine lake: discrepancy with their contribution to bacterial production

(2011) MT Pérez et al.   AQUATIC MICROBIAL ECOLOGY

Rhodoferax-related pufM gene cluster dominates the aerobic anoxygenic phototrophic communities in German freshwater lakes

(2011) Ivette Salka et al.   ENVIRONMENTAL MICROBIOLOGY

Stochastic and deterministic processes interact in the assembly of desert microbial communities on a global scale

(2011) Tancredi Caruso et al.   ISME Journal

A Guide to the Natural History of Freshwater Lake Bacteria

(2011) R. J. Newton et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Disentangling the importance of ecological niches from stochastic processes across scales

(2011) J. M. Chase et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Picante: R tools for integrating phylogenies and ecology

(2010) S. W. Kembel et al.   BIOINFORMATICS

The bacterial community composition of  the surface microlayer in a high mountain lake

(2010) Paul Hörtnagl et al.   FEMS MICROBIOLOGY ECOLOGY

Conceptual Synthesis in Community Ecology

(2010) Mark Vellend   QUARTERLY REVIEW OF BIOLOGY

Stochastic Community Assembly Causes Higher Biodiversity in More Productive Environments

(2010) J. M. Chase   SCIENCE

Pyrosequencing reveals contrasting seasonal dynamics of taxa within Baltic Sea bacterioplankton communities

(2009) Anders F Andersson et al.   ISME Journal

The influence of habitat heterogeneity on freshwater bacterial community composition and dynamics

(2008) Ashley Shade et al.   ENVIRONMENTAL MICROBIOLOGY