Genomic selection and its research progress in aquaculture breeding

Assessment of the performance of different imputation methods for low-coverage sequencing in Holstein cattle

(2022) Jun Teng et al.   JOURNAL OF DAIRY SCIENCE

Genomic Selection and Genome-Wide Association Analysis for Stress Response, Disease Resistance and Body Weight in European Seabass

(2022) Stavroula Oikonomou et al.   Animals

GWAS and genomic prediction revealed potential for genetic improvement of large yellow croaker adapting to high plant protein diet

(2022) Qiaozhen Ke et al.   AQUACULTURE

Genomic selection applications can improve the environmental performance of aquatics: A case study on the heat tolerance of abalone

(2022) Junyu Liu et al.   Evolutionary Applications

The impact of genetic relationship between training and validation populations on genomic prediction accuracy in Atlantic salmon

(2022) Clémence Fraslin et al.   Aquaculture Reports

A review of deep learning applications for genomic selection

(2021) Osval Antonio Montesinos-López et al.   BMC GENOMICS

Genomic predictions for fillet yield and firmness in rainbow trout using reduced-density SNP panels

(2021) Rafet Al-Tobasei et al.   BMC GENOMICS

Estimation of genetic parameters for resistance to Vibrio alginolyticus infection in the Pacific oyster (Crassostrea gigas)

(2021) Shangyu Zhai et al.   AQUACULTURE

Genomic selection for resistance to Francisellosis in commercial Nile tilapia population: Genetic and genomic parameters, correlation with growth rate and predictive ability

(2021) Rajesh Joshi et al.   AQUACULTURE

Increased accuracy of genomic predictions for growth under chronic thermal stress in rainbow trout by prioritizing variants from GWAS using imputed sequence data

(2021) Grazyella M. Yoshida et al.   Evolutionary Applications

First genomic prediction and genome‐wide association for complex growth‐related traits in Rock Bream (Oplegnathus fasciatus)

(2021) Jie Gong et al.   Evolutionary Applications

Strategies to improve the accuracy and reduce costs of genomic prediction in aquaculture species

(2021) Hailiang Song et al.   Evolutionary Applications

Commercial Implementation of Genomic selection in Tasmanian Atlantic Salmon: Scheme evolution and validation

(2021) Klara L. Verbyla et al.   Evolutionary Applications

Genome editing and its applications in genetic improvement in aquaculture

(2021) Zituo Yang et al.   Reviews in Aquaculture

Genome editing on finfish: Current status and implications for sustainability

(2021) Torill Bakkelund Blix et al.   Reviews in Aquaculture

Accelerated deciphering of the genetic architecture of agricultural economic traits in pigs using a low-coverage whole-genome sequencing strategy

(2021) Ruifei Yang et al.   GigaScience

Genomic Selection and Genome-wide Association Study for Feed-Efficiency Traits in a Farmed Nile Tilapia (Oreochromis niloticus) Population

(2021) Agustin Barría et al.   Frontiers in Genetics

Optimization of Genomic Selection to Improve Disease Resistance in Two Marine Fishes, the European Sea Bass (Dicentrarchus labrax) and the Gilthead Sea Bream (Sparus aurata)

(2021) Ronan Griot et al.   Frontiers in Genetics

Predicting for disease resistance in aquaculture species using machine learning models

(2021) Christos Palaiokostas   Aquaculture Reports

Data imputation and machine learning improve association analysis and genomic prediction for resistance to fish photobacteriosis in the gilthead sea bream

(2021) Luca Bargelloni et al.   Aquaculture Reports

Current status and potential of genomic selection to improve selective breeding in the main aquaculture species of International Council for the Exploration of the Sea (ICES) member countries

(2021) Pierre Boudry et al.   Aquaculture Reports

Genomic prediction of growth traits in scallops using convolutional neural networks

(2021) Xinghai Zhu et al.   AQUACULTURE

Threshold models using Gibbs sampling and machine learning genomic predictions for skin fluke disease recorded under field environment in yellowtail kingfish Seriola lalandi

(2021) Nguyen Hong Nguyen et al.   AQUACULTURE

Impact of accounting for allele dosage on genomic prediction in a simulated autopolyploid sturgeon population

(2021) Hailiang Song et al.   AQUACULTURE

Estimation of genetic parameters for growth and egg related traits in Russian sturgeon (Acipenser gueldenstaedtii)

(2021) Hailiang Song et al.   AQUACULTURE

Predicted strong genetic gains from the application of genomic selection to improve growth related traits in barramundi (Lates calcarifer)

(2021) Dean R. Jerry et al.   AQUACULTURE

Genetic architecture and genomic selection of fatty acid composition predicted by Raman spectroscopy in rainbow trout

(2021) Carole Blay et al.   BMC GENOMICS

Genotype‐by‐environment interactions drive the maintenance of genetic variation in a Salmo trutta L. hybrid zone

(2021) Dorinda Marie Folio et al.   Evolutionary Applications

How genomic selection has increased rates of genetic gain and inbreeding in the Australian national herd, genomic information nucleus, and bulls

(2021) B.A. Scott et al.   JOURNAL OF DAIRY SCIENCE

Potential of genomic selection for improvement of resistance to ostreid herpesvirus in Pacific oyster ( Crassostrea gigas )

(2020) A. P. Gutierrez et al.   ANIMAL GENETICS

Genomic Prediction Using Low Density Marker Panels in Aquaculture: Performance Across Species, Traits, and Genotyping Platforms

(2020) Christina Kriaridou et al.   Frontiers in Genetics

Genetic parameters for resistance to Tilapia Lake Virus (TiLV) in Nile tilapia (Oreochromis niloticus)

(2020) Agustin Barría et al.   AQUACULTURE

Harnessing genomics to fast-track genetic improvement in aquaculture

(2020) Ross D. Houston et al.   NATURE REVIEWS GENETICS

The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization

(2020) Kang Du et al.   Nature Ecology & Evolution

Efficient CRISPR/Cas9 genome editing in a salmonid fish cell line using a lentivirus delivery system

(2020) Remi L. Gratacap et al.   BMC BIOTECHNOLOGY

Genomic prediction of growth traits for pigs in the presence of genotype by environment interactions using single-step genomic reaction norm model

(2020) Hailiang Song et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

Deep learning for smart fish farming: applications, opportunities and challenges

(2020) Xinting Yang et al.   Reviews in Aquaculture

Development and Validation of an Open Access SNP Array for Nile Tilapia (Oreochromis niloticus)

(2020) Carolina Peñaloza et al.   G3-Genes Genomes Genetics

Development of a 50K SNP array for japanese flounder and its application in genomic selection for disease resistance

(2020) Qian Zhou et al.   Engineering

Evaluation of the utility of genomic information to improve genetic evaluation of feed efficiency traits of the Pacific white shrimp Litopenaeus vannamei

(2020) Ping Dai et al.   AQUACULTURE

Accuracy of genomic prediction of host resistance to salmon lice in Atlantic salmon (Salmo salar) using imputed high-density genotypes

(2020) M.H. Kjetså et al.   AQUACULTURE

Genetic architecture and genomic selection of female reproduction traits in rainbow trout

(2020) J. D’Ambrosio et al.   BMC GENOMICS

Optimizing whole-genomic prediction for autotetraploid blueberry breeding

(2020) Ivone de Bem Oliveira et al.   HEREDITY

Experimental validation of genetic selection for resistance against Streptococcus agalactiae via different routes of infection in the commercial Nile tilapia breeding programme

(2020) Rajesh Joshi et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

Leveraging Multiple Layers of Data To Predict Drosophila Complex Traits

(2020) Fabio Morgante et al.   G3-Genes Genomes Genetics

The superiority of multi-trait models with genotype-by-environment interactions in a limited number of environments for genomic prediction in pigs

(2020) Hailiang Song et al.   Journal of Animal Science and Biotechnology

Development and Evaluation of a High-Throughput Single-Nucleotide Polymorphism Array for Large Yellow Croaker (Larimichthys crocea)

(2020) Tao Zhou et al.   Frontiers in Genetics

Genotype by environment interaction between aerated and non-aerated ponds and the impact of aeration on genetic parameters in Nile tilapia (Oreochromis niloticus)

(2020) Samuel B. Mengistu et al.   AQUACULTURE

Genomic selection for parasitic ciliate Cryptocaryon irritans resistance in large yellow croaker

(2020) Ji Zhao et al.   AQUACULTURE

Genomic selection for white spot syndrome virus resistance in whiteleg shrimp boosts survival under an experimental challenge test

(2020) Marie Lillehammer et al.   Scientific Reports

Genetic Variation, GWAS and Accuracy of Prediction for Host Resistance to Sparicotyle chrysophrii in Farmed Gilthead Sea Bream (Sparus aurata)

(2020) Muhammad Luqman Aslam et al.   Frontiers in Genetics

Evaluation for the effect of low-coverage sequencing on genomic selection in large yellow croaker

(2020) Wenjing Zhang et al.   AQUACULTURE

Estimation of genetic parameters for carotenoid traits in Chinese mitten crab, Eriocheir sinensis, females

(2020) Qingqing Li et al.   AQUACULTURE

Penaeid shrimp genome provides insights into benthic adaptation and frequent molting

(2019) Xiaojun Zhang et al.   Nature Communications

Using Different Single-Step Strategies to Improve the Efficiency of Genomic Prediction on Body Measurement Traits in Pig

(2019) Hailiang Song et al.   Frontiers in Genetics

Genomic Selection in Aquaculture: Application, Limitations and Opportunities With Special Reference to Marine Shrimp and Pearl Oysters

(2019) Kyall R. Zenger et al.   Frontiers in Genetics

Integrating Gene Expression Data Into Genomic Prediction

(2019) Zhengcao Li et al.   Frontiers in Genetics

Genomic and Transcriptomic Analysis of Amoebic Gill Disease Resistance in Atlantic Salmon (Salmo salar L.)

(2019) Solomon Antwi Boison et al.   Frontiers in Genetics

Identification of optimal prediction models using multi-omic data for selecting hybrid rice

(2019) Shibo Wang et al.   HEREDITY

Interactions and management for the future of marine aquaculture and capture fisheries

(2019) Tyler Clavelle et al.   FISH AND FISHERIES

Genetic parameters for growth and survival in rohu carp (Labeo rohita)

(2019) Bjarne Gjerde et al.   AQUACULTURE

Evaluation on the genomic selection in Litopenaeus vannamei for the resistance against Vibrio parahaemolyticus

(2019) Quanchao Wang et al.   AQUACULTURE

A directed learning strategy integrating multiple omic data improves genomic prediction

(2019) Xuehai Hu et al.   PLANT BIOTECHNOLOGY JOURNAL

Hsp70 knockdown reduced the tolerance of Litopenaeus vannamei post larvae to low pH and salinity

(2019) Kou Aishi et al.   AQUACULTURE

Genotype by environment interaction for female fertility traits under conventional and organic production systems in Danish Holsteins

(2019) A. Liu et al.   JOURNAL OF DAIRY SCIENCE

Potential of Genome Editing to Improve Aquaculture Breeding and Production

(2019) Remi L. Gratacap et al.   TRENDS IN GENETICS

Genomic Selection with Allele Dosage in Panicum maximum Jacq.

(2019) Letícia A. de C. Lara et al.   G3-Genes Genomes Genetics

Genome-Wide Association Study and Cost-Efficient Genomic Predictions for Growth and Fillet Yield in Nile Tilapia (Oreochromis niloticus)

(2019) Grazyella M. Yoshida et al.   G3-Genes Genomes Genetics

Disentangling Genetic Variation for Resistance and Endurance to Scuticociliatosis in Turbot Using Pedigree and Genomic Information

(2019) María Saura et al.   Frontiers in Genetics

Optimizing Genomic Prediction of Host Resistance to Koi Herpesvirus Disease in Carp

(2019) Christos Palaiokostas et al.   Frontiers in Genetics

Genetic parameters and genotype by environment interactions for growth traits and survival of olive flounder (Paralichthys olivaceus) in recirculating aquaculture system and flow-through system

(2019) Yangzhen Li et al.   AQUACULTURE

Use of a Bayesian model including QTL markers increases prediction reliability when test animals are distant from the reference population

(2019) Peipei Ma et al.   JOURNAL OF DAIRY SCIENCE

Accuracy of selection for omega-3 fatty acid content in Atlantic salmon fillets

(2019) Siri S. Horn et al.   AQUACULTURE

Genomic prediction for disease resistance to Hepatopancreatic parvovirus and growth, carcass and quality traits in Banana shrimp Fenneropenaeus merguiensis

(2019) Nguyen Hong Nguyen et al.   GENOMICS

Evaluation of Genomic Selection for Seven Economic Traits in Yellow Drum (Nibea albiflora)

(2019) Guijia Liu et al.   MARINE BIOTECHNOLOGY

Transcriptome-based prediction of complex traits in maize

(2019) Christina B Azodi et al.   PLANT CELL

Genomic prediction for commercial traits using univariate and multivariate approaches in Nile tilapia (Oreochromis niloticus)

(2019) R. Joshi et al.   AQUACULTURE

Optimizing Low-Cost Genotyping and Imputation Strategies for Genomic Selection in Atlantic Salmon

(2019) Smaragda Tsairidou et al.   G3-Genes Genomes Genetics

Accuracy of genotype imputation and genomic predictions in a two-generation farmed Atlantic salmon population using high-density and low-density SNP panels

(2018) Grazyella M. Yoshida et al.   AQUACULTURE

Genetics of resistance to photobacteriosis in gilthead sea bream (Sparus aurata) using 2b-RAD sequencing

(2018) Muhammad L Aslam et al.   BMC GENETICS

Genomic prediction using DArT-Seq technology for yellowtail kingfish Seriola lalandi

(2018) Nguyen H. Nguyen et al.   BMC GENOMICS

Single-step genomic evaluation improves accuracy of breeding value predictions for resistance to infectious pancreatic necrosis virus in rainbow trout

(2018) Grazyella M. Yoshida et al.   GENOMICS

Accurate genomic predictions for BCWD resistance in rainbow trout are achieved using low-density SNP panels: Evidence that long-range LD is a major contributing factor

(2018) Roger L. Vallejo et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

Short communication: Improving the accuracy of genomic prediction of body conformation traits in Chinese Holsteins using markers derived from high-density marker panels

(2018) H. Song et al.   JOURNAL OF DAIRY SCIENCE

Genomic Selection Using BayesCπ and GBLUP for Resistance Against Edwardsiella tarda in Japanese Flounder (Paralichthys olivaceus)

(2018) Yang Liu et al.   MARINE BIOTECHNOLOGY

Genomic Predictions and Genome-Wide Association Study of Resistance Against Piscirickettsia salmonis in Coho Salmon ( Oncorhynchus kisutch ) Using ddRAD Sequencing

(2018) Agustín Barría et al.   G3-Genes Genomes Genetics

Genome-Wide Association and Genomic Selection for Resistance to Amoebic Gill Disease in Atlantic Salmon

(2018) Diego Robledo et al.   G3-Genes Genomes Genetics

Accuracy of Genomic Evaluations of Juvenile Growth Rate in Common Carp (Cyprinus carpio) Using Genotyping by Sequencing

(2018) Christos Palaiokostas et al.   Frontiers in Genetics

Predicting Growth Traits with Genomic Selection Methods in Zhikong Scallop (Chlamys farreri)

(2018) Yangfan Wang et al.   MARINE BIOTECHNOLOGY

Genomic Selection for Growth Traits in Pacific Oyster (Crassostrea gigas): Potential of Low-Density Marker Panels for Breeding Value Prediction

(2018) Alejandro P. Gutierrez et al.   Frontiers in Genetics

Prediction and association mapping of agronomic traits in maize using multiple omic data

(2017) Y Xu et al.   HEREDITY

Genomic prediction unifies animal and plant breeding programs to form platforms for biological discovery

(2017) John M Hickey et al.   NATURE GENETICS

Applications of genotyping by sequencing in aquaculture breeding and genetics

(2017) Diego Robledo et al.   Reviews in Aquaculture

Genomic Prediction Accuracy for Resistance Against Piscirickettsia salmonis in Farmed Rainbow Trout

(2017) Grazyella M. Yoshida et al.   G3-Genes Genomes Genetics

Development of a Medium Density Combined-Species SNP Array for Pacific and European Oysters ( Crassostrea gigas and Ostrea edulis )

(2017) Alejandro P. Gutierrez et al.   G3-Genes Genomes Genetics

Genotype Imputation To Improve the Cost-Efficiency of Genomic Selection in Farmed Atlantic Salmon

(2017) Hsin-Yuan Tsai et al.   G3-Genes Genomes Genetics

Construction and evaluation of a high-density SNP array for the Pacific oyster (Crassostrea gigas)

(2017) Haigang Qi et al.   PLoS One

Development of a 690 K SNP array in catfish and its application for genetic mapping and validation of the reference genome sequence

(2017) Qifan Zeng et al.   Scientific Reports

A comparative integrated gene-based linkage and locus ordering by linkage disequilibrium map for the Pacific white shrimp, Litopenaeus vannamei

(2017) David B. Jones et al.   Scientific Reports

Increased prediction accuracy using a genomic feature model including prior information on quantitative trait locus regions in purebred Danish Duroc pigs

(2016) Pernille Sarup et al.   BMC GENETICS

Comparative analysis of the GBLUP, emBayesB, and GWAS algorithms to predict genetic values in large yellow croaker (Larimichthys crocea)

(2016) Linsong Dong et al.   BMC GENOMICS

Exploiting biological priors and sequence variants enhances QTL discovery and genomic prediction of complex traits

(2016) I. M. MacLeod et al.   BMC GENOMICS

Predictive ability of genomic selection models for breeding value estimation on growth traits of Pacific white shrimp Litopenaeus vannamei

(2016) Quanchao Wang et al.   CHINESE JOURNAL OF OCEANOLOGY AND LIMNOLOGY

A 3D machine vision system for quality grading of Atlantic salmon

(2016) Øystein Sture et al.   COMPUTERS AND ELECTRONICS IN AGRICULTURE

Increased Proportion of Variance Explained and Prediction Accuracy of Survival of Breast Cancer Patients with Use of Whole-Genome Multiomic Profiles

(2016) A. I. Vazquez et al.   GENETICS

Genomic Prediction for Quantitative Traits Is Improved by Mapping Variants to Gene Ontology Categories in Drosophila melanogaster

(2016) Stefan M. Edwards et al.   GENETICS

Short communication: Improving accuracy of predicting breeding values in Brazilian Holstein population by adding data from Nordic and French Holstein populations

(2016) X. Li et al.   JOURNAL OF DAIRY SCIENCE

Genomic Selection Using Extreme Phenotypes and Pre-Selection of SNPs in Large Yellow Croaker (Larimichthys crocea)

(2016) Linsong Dong et al.   MARINE BIOTECHNOLOGY

Genomewide single nucleotide polymorphism discovery in Atlantic salmon (Salmo salar): validation in wild and farmed American and European populations

(2016) J. M. Yáñez et al.   Molecular Ecology Resources

The Atlantic salmon genome provides insights into rediploidization

(2016) Sigbjørn Lien et al.   NATURE

Changes in genetic selection differentials and generation intervals in US Holstein dairy cattle as a result of genomic selection

(2016) Adriana García-Ruiz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Selection response in fish and shellfish: a review

(2016) Trygve Gjedrem et al.   Reviews in Aquaculture

Application of machine vision systems in aquaculture with emphasis on fish: state-of-the-art and key issues

(2016) Mohammadmehdi Saberioon et al.   Reviews in Aquaculture

Genomic Prediction of Resistance to Pasteurellosis in Gilthead Sea Bream (Sparus aurata) Using 2b-RAD Sequencing

(2016) C. Palaiokostas et al.   G3-Genes Genomes Genetics

AGHmatrix: R Package to Construct Relationship Matrices for Autotetraploid and Diploid Species: A Blueberry Example

(2016) Rodrigo R. Amadeu et al.   Plant Genome

Genomic Prediction for Quantitative Traits Is Improved by Mapping Variants to Gene Ontology Categories in Drosophila melanogaster

(2016) Stefan M. Edwards et al.   GENETICS

Evaluation of Genome-Enabled Selection for Bacterial Cold Water Disease Resistance Using Progeny Performance Data in Rainbow Trout: Insights on Genotyping Methods and Genomic Prediction Models

(2016) Roger L. Vallejo et al.   Frontiers in Genetics

Genomic Selection Improves Response to Selection in Resilience by Exploiting Genotype by Environment Interactions

(2016) Han A. Mulder   Frontiers in Genetics

Evaluation of the 2b-RAD method for genomic selection in scallop breeding

(2016) Jinzhuang Dou et al.   Scientific Reports

Evidence for a maternal origin of spontaneous autopolyploidy in cultured white sturgeon (Acipenser transmontanus)

(2015) Daphne A. Gille et al.   AQUACULTURE

Genome wide association and genomic prediction for growth traits in juvenile farmed Atlantic salmon using a high density SNP array

(2015) Hsin-Yuan Tsai et al.   BMC GENOMICS

Epithelial Cadherin Determines Resistance to Infectious Pancreatic Necrosis Virus in Atlantic Salmon

(2015) Thomas Moen et al.   GENETICS

Improving genetic evaluation of litter size and piglet mortality for both genotyped and nongenotyped individuals using a single-step method1

(2015) X. Guo et al.   JOURNAL OF ANIMAL SCIENCE

Deep learning

(2015) Yann LeCun et al.   NATURE

The draft genome of the grass carp (Ctenopharyngodon idellus) provides insights into its evolution and vegetarian adaptation

(2015) Yaping Wang et al.   NATURE GENETICS

A review of genotype-by-environment interaction and micro-environmental sensitivity in aquaculture species

(2015) Panya Sae-Lim et al.   Reviews in Aquaculture

Accuracy of Whole-Genome Prediction Using a Genetic Architecture-Enhanced Variance-Covariance Matrix

(2015) Zhe Zhang et al.   G3-Genes Genomes Genetics

Second-Generation Linkage Maps for the Pacific Oyster Crassostrea gigas Reveal Errors in Assembly of Genome Scaffolds

(2015) Dennis Hedgecock et al.   G3-Genes Genomes Genetics

Epithelial Cadherin Determines Resistance to Infectious Pancreatic Necrosis Virus in Atlantic Salmon

(2015) Thomas Moen et al.   GENETICS

Fertility of a spontaneous hexaploid male Siberian sturgeon, Acipenser baerii

(2014) Miloš Havelka et al.   BMC GENETICS

Development and evaluation of the first high-throughput SNP array for common carp (Cyprinus carpio)

(2014) Jian Xu et al.   BMC GENOMICS

Development and validation of a high density SNP genotyping array for Atlantic salmon (Salmo salar)

(2014) Ross D Houston et al.   BMC GENOMICS

Expanding the genetic editing tool kit: ZFNs, TALENs, and CRISPR-Cas9

(2014) Rajat M. Gupta et al.   JOURNAL OF CLINICAL INVESTIGATION

Using recursion to compute the inverse of the genomic relationship matrix

(2014) I. Misztal et al.   JOURNAL OF DAIRY SCIENCE

The development and characterization of a 57K single nucleotide polymorphism array for rainbow trout

(2014) Y. Palti et al.   Molecular Ecology Resources

The Development of a High Density Linkage Map for Black Tiger Shrimp (Penaeus monodon) Based on cSNPs

(2014) Matthew Baranski et al.   PLoS One

NIR Spectroscopy and Imaging Techniques for Evaluation of Fish Quality—A Review

(2013) Dan Liu et al.   APPLIED SPECTROSCOPY REVIEWS

Automatic shrimp shape grading using evolution constructed features

(2013) Dong Zhang et al.   COMPUTERS AND ELECTRONICS IN AGRICULTURE

Genotype-by-environment interaction of growth traits in rainbow trout (Oncorhynchus mykiss): A continental scale study1

(2013) P. Sae-Lim et al.   JOURNAL OF ANIMAL SCIENCE

Genome-Wide SNP Validation and Mantle Tissue Transcriptome Analysis in the Silver-Lipped Pearl Oyster, Pinctada maxima

(2013) David B. Jones et al.   MARINE BIOTECHNOLOGY

Single-step methods for genomic evaluation in pigs

(2012) O. F. Christensen et al.   Animal

The importance of selective breeding in aquaculture to meet future demands for animal protein: A review

(2012) Trygve Gjedrem et al.   AQUACULTURE

Genomic prediction for Nordic Red Cattle using one-step and selection index blending

(2012) G. Su et al.   JOURNAL OF DAIRY SCIENCE

Improving accuracy of genomic predictions within and between dairy cattle breeds with imputed high-density single nucleotide polymorphism panels

(2012) M. Erbe et al.   JOURNAL OF DAIRY SCIENCE

Extension of the bayesian alphabet for genomic selection

(2011) David Habier et al.   BMC BIOINFORMATICS

A dense SNP-based linkage map for Atlantic salmon (Salmo salar) reveals extended chromosome homeologies and striking differences in sex-specific recombination patterns

(2011) Sigbjørn Lien et al.   BMC GENOMICS

Effects of genomic selection on genetic improvement, inbreeding, and merit of young versus proven bulls

(2011) A.P.W. de Roos et al.   JOURNAL OF DAIRY SCIENCE

Reliability of direct genomic values for animals with different relationships within and to the reference population

(2011) M. Pszczola et al.   JOURNAL OF DAIRY SCIENCE

Genotype by environment interactions for growth in European seabass (Dicentrarchus labrax) are large when growth rate rather than weight is considered

(2010) Mathilde Dupont-Nivet et al.   AQUACULTURE

Accurate Prediction of Genetic Values for Complex Traits by Whole-Genome Resequencing

(2010) T. Meuwissen et al.   GENETICS

The Impact of Genetic Architecture on Genome-Wide Evaluation Methods

(2010) H. D. Daetwyler et al.   GENETICS

Hot topic: A unified approach to utilize phenotypic, full pedigree, and genomic information for genetic evaluation of Holstein final score1

(2010) I. Aguilar et al.   JOURNAL OF DAIRY SCIENCE

Best Linear Unbiased Prediction of Genomic Breeding Values Using a Trait-Specific Marker-Derived Relationship Matrix

(2010) Zhe Zhang et al.   PLoS One

Confirmation and fine-mapping of a major QTL for resistance to infectious pancreatic necrosis in Atlantic salmon (Salmo salar): population-level associations between markers and trait

(2009) Thomas Moen et al.   BMC GENOMICS

Computing procedures for genetic evaluation including phenotypic, full pedigree, and genomic information

(2009) I. Misztal et al.   JOURNAL OF DAIRY SCIENCE

Invited review: Genomic selection in dairy cattle: Progress and challenges

(2009) B.J. Hayes et al.   JOURNAL OF DAIRY SCIENCE

Mapping genes for complex traits in domestic animals and their use in breeding programmes

(2009) Michael E. Goddard et al.   NATURE REVIEWS GENETICS

Reproducing Kernel Hilbert Spaces Regression Methods for Genomic Assisted Prediction of Quantitative Traits

(2008) D. Gianola et al.   GENETICS

Efficient Methods to Compute Genomic Predictions

(2008) P.M. VanRaden   JOURNAL OF DAIRY SCIENCE

Invited Review: Reliability of genomic predictions for North American Holstein bulls

(2008) P.M. VanRaden et al.   JOURNAL OF DAIRY SCIENCE