Development of a 690 K SNP array in catfish and its application for genetic mapping and validation of the reference genome sequence

Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis

(2016) Q. Zeng et al.   BIOLOGY OF REPRODUCTION

High-resolution genetic linkage mapping, high-temperature tolerance and growth-related quantitative trait locus (QTL) identification in Marsupenaeus japonicus

(2016) Xia Lu et al.   MOLECULAR GENETICS AND GENOMICS

The channel catfish genome sequence provides insights into the evolution of scale formation in teleosts

(2016) Zhanjiang Liu et al.   Nature Communications

An ultra-high density linkage map and QTL mapping for sex and growth-related traits of common carp (Cyprinus carpio)

(2016) Wenzhu Peng et al.   Scientific Reports

A high-density genetic map and growth related QTL mapping in bighead carp (Hypophthalmichthys nobilis)

(2016) Beide Fu et al.   Scientific Reports

Construction of a high-density genetic map and QTL mapping for pearl quality-related traits in Hyriopsis cumingii

(2016) Zhi-Yi Bai et al.   Scientific Reports

High-density interspecific genetic linkage mapping provides insights into genomic incompatibility between channel catfish and blue catfish

(2015) S. Liu et al.   ANIMAL GENETICS

Genomic correlates of recombination rate and its variability across eight recombination maps in the western honey bee (Apis mellifera L.)

(2015) Caitlin R Ross et al.   BMC GENOMICS

Second generation physical and linkage maps of yellowtail (Seriola quinqueradiata) and comparison of synteny with four model fish

(2015) Jun-ya Aoki et al.   BMC GENOMICS

A genome-wide association study in catfish reveals the presence of functional hubs of related genes within QTLs for columnaris disease resistance

(2015) Xin Geng et al.   BMC GENOMICS

Genome-wide SNP identification for the construction of a high-resolution genetic map of Japanese flounder (Paralichthys olivaceus): applications to QTL mapping of Vibrio anguillarum disease resistance and comparative genomic analysis

(2015) C. Shao et al.   DNA RESEARCH

Construction of Ultradense Linkage Maps with Lep-MAP2: Stickleback F2Recombinant Crosses as an Example

(2015) Pasi Rastas et al.   Genome Biology and Evolution

Construction of the High-Density Genetic Linkage Map and Chromosome Map of Large Yellow Croaker (Larimichthys crocea)

(2015) Jingqun Ao et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The effects of chromatin organization on variation in mutation rates in the genome

(2015) Kateryna D. Makova et al.   NATURE REVIEWS GENETICS

High-Density Genetic Mapping with Interspecific Hybrids of Two Sea Urchins, Strongylocentrotus nudus and S. intermedius, by RAD Sequencing

(2015) Zunchun Zhou et al.   PLoS One

Construction of a High-Density Genetic Map and Quantitative Trait Locus Mapping in the Sea Cucumber Apostichopus japonicus

(2015) Meilin Tian et al.   Scientific Reports

Construction of a high-density linkage map and fine mapping of QTL for growth in Asian seabass

(2015) Le Wang et al.   Scientific Reports

Gene map of large yellow croaker (Larimichthys crocea) provides insights into teleost genome evolution and conserved regions associated with growth

(2015) Shijun Xiao et al.   Scientific Reports

High-Density Genetic Linkage Mapping in Turbot (Scophthalmus maximus L.) Based on SNP Markers and Major Sex- and Growth-Related Regions Detection

(2015) Weiji Wang et al.   PLoS One

Linkage maps of the Atlantic salmon (Salmo salar) genome derived from RAD sequencing

(2014) Serap Gonen et al.   BMC GENOMICS

A ddRAD-based genetic map and its integration with the genome assembly of Japanese eel (Anguilla japonica) provides insights into genome evolution after the teleost-specific genome duplication

(2014) Wataru Kai et al.   BMC GENOMICS

Construction of a high-density, high-resolution genetic map and its integration with BAC-based physical map in channel catfish

(2014) Y. Li et al.   DNA RESEARCH

Second generation genetic linkage map for the gilthead sea bream Sparus aurata L.

(2014) Costas S. Tsigenopoulos et al.   Marine Genomics

The Development of a High Density Linkage Map for Black Tiger Shrimp (Penaeus monodon) Based on cSNPs

(2014) Matthew Baranski et al.   PLoS One

Genetic Mapping and QTL Analysis of Growth-Related Traits in Pinctada fucata Using Restriction-Site Associated DNA Sequencing

(2014) Yaoguo Li et al.   PLoS One

Identification and Analysis of Genome-Wide SNPs Provide Insight into Signatures of Selection and Domestication in Channel Catfish (Ictalurus punctatus)

(2014) Luyang Sun et al.   PLoS One

A Dense Linkage Map for Chinook salmon ( Oncorhynchus tshawytscha ) Reveals Variable Chromosomal Divergence After an Ancestral Whole Genome Duplication Event

(2014) Marine S. O. Brieuc et al.   G3-Genes Genomes Genetics

Comparative Mapping Between Coho Salmon (Oncorhynchus kisutch) and Three Other Salmonids Suggests a Role for Chromosomal Rearrangements in the Retention of Duplicated Regions Following a Whole Genome Duplication Event

(2014) M. Kodama et al.   G3-Genes Genomes Genetics

A second generation genetic linkage map for silver carp (Hypophthalmichehys molitrix) using microsatellite markers

(2013) Wenjie Guo et al.   AQUACULTURE

A RAD-based linkage map and comparative genomics in the gudgeons (genus Gnathopogon, Cyprinidae)

(2013) Ryo Kakioka et al.   BMC GENOMICS

A high-density SNP genetic linkage map for the silver-lipped pearl oyster, Pinctada maxima: a valuable resource for gene localisation and marker-assisted selection

(2013) David B Jones et al.   BMC GENOMICS

Mapping the sex determination locus in the Atlantic halibut (Hippoglossus hippoglossus) using RAD sequencing

(2013) Christos Palaiokostas et al.   BMC GENOMICS

Bulk segregant RNA-seq reveals expression and positional candidate genes and allele-specific expression for disease resistance against enteric septicemia of catfish

(2013) Ruijia Wang et al.   BMC GENOMICS

High-Resolution Linkage and Quantitative Trait Locus Mapping Aided by Genome Survey Sequencing: Building Up An Integrative Genomic Framework for a Bivalve Mollusc

(2013) W. Jiao et al.   DNA RESEARCH

RNA-Seq reveals expression signatures of genes involved in oxygen transport, protein synthesis, folding, and degradation in response to heat stress in catfish

(2013) Shikai Liu et al.   PHYSIOLOGICAL GENOMICS

A synthetic rainbow trout linkage map provides new insights into the salmonid whole genome duplication and the conservation of synteny among teleosts

(2012) René Guyomard et al.   BMC GENETICS

Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote

(2012) Shikai Liu et al.   BMC GENOMICS

Discovery of novel variants in genotyping arrays improves genotype retention and reduces ascertainment bias

(2012) John P Didion et al.   BMC GENOMICS

Transcriptomic signatures of attachment, NF-κB suppression and IFN stimulation in the catfish gill following columnaris bacterial infection

(2012) Fanyue Sun et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

RNA-seq analysis of mucosal immune responses reveals signatures of intestinal barrier disruption and pathogen entry following Edwardsiella ictaluri infection in channel catfish, Ictalurus punctatus

(2012) Chao Li et al.   FISH & SHELLFISH IMMUNOLOGY

Second-Generation Genetic Linkage Map of Catfish and Its Integration with the BAC-Based Physical Map

(2012) Parichart Ninwichian et al.   G3-Genes Genomes Genetics

Generation of genome-scale gene-associated SNPs in catfish for the construction of a high-density SNP array

(2011) Shikai Liu et al.   BMC GENOMICS

A high-resolution linkage map for comparative genome analysis and QTL fine mapping in Asian seabass, Lates calcarifer

(2011) Chun Ming Wang et al.   BMC GENOMICS

A dense SNP-based linkage map for Atlantic salmon (Salmo salar) reveals extended chromosome homeologies and striking differences in sex-specific recombination patterns

(2011) Sigbjørn Lien et al.   BMC GENOMICS

A consensus linkage map of the grass carp (Ctenopharyngodon idella) based on microsatellites and SNPs

(2010) Jun Xia et al.   BMC GENOMICS

A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus)

(2010) Cecilia Castano-Sanchez et al.   BMC GENOMICS

BAC-based upgrading and physical integration of a genetic SNP map in Atlantic salmon

(2009) S. Lorenz et al.   ANIMAL GENETICS

A gene-based SNP linkage map for pacific white shrimp, Litopenaeus vannamei

(2009) Z.-Q. Du et al.   ANIMAL GENETICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Construction of Genetic Linkage Maps and Comparative Genome Analysis of Catfish Using Gene-Associated Markers

(2009) H. Kucuktas et al.   GENETICS

The evolution of heterochiasmy: the role of sexual selection and sperm competition in determining sex-specific recombination rates in eutherian mammals

(2009) JUDITH E. MANK   Genetics Research