Genomic and Transcriptomic Analysis of Amoebic Gill Disease Resistance in Atlantic Salmon (Salmo salar L.)

Genome-Wide Association and Genomic Selection for Resistance to Amoebic Gill Disease in Atlantic Salmon

(2018) Diego Robledo et al.   G3-Genes Genomes Genetics

Autotaxin-lysophosphatidic acid receptor signalling regulates hepatitis C virus replication

(2017) Michelle J. Farquhar et al.   JOURNAL OF HEPATOLOGY

Immune gene expression in the gills of Atlantic salmon ( Salmo salar L.) following experimental reinfection with Neoparamoeba perurans

(2016) Ylenia Pennacchi et al.   AQUACULTURE

Incidence and distribution of amoebic gill disease (AGD) — An epidemiological review

(2016) Tina Oldham et al.   AQUACULTURE

Gene expression profiling in melanised sites of Atlantic salmon fillets

(2016) Aleksei Krasnov et al.   FISH & SHELLFISH IMMUNOLOGY

The Atlantic salmon genome provides insights into rediploidization

(2016) Sigbjørn Lien et al.   NATURE

Weighting Strategies for Single-Step Genomic BLUP: An Iterative Approach for Accurate Calculation of GEBV and GWAS

(2016) Xinyue Zhang et al.   Frontiers in Genetics

Which Th pathway is involved during late stage amoebic gill disease?

(2015) Ottavia Benedicenti et al.   FISH & SHELLFISH IMMUNOLOGY

Estimates of genetic variance and variance of predicted genetic merits using pedigree or genomic relationship matrices in six Brown Swiss cattle populations for different traits

(2015) A. Loberg et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

Accuracy of Whole-Genome Prediction Using a Genetic Architecture-Enhanced Variance-Covariance Matrix

(2015) Zhe Zhang et al.   G3-Genes Genomes Genetics

Genomic Heritability: What Is It?

(2015) Gustavo de los Campos et al.   PLoS Genetics

Second-generation PLINK: rising to the challenge of larger and richer datasets

(2015) Christopher C Chang et al.   GigaScience

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Evidence of immune and inflammatory processes in the gills of AGD-affected Atlantic salmon, Salmo salar L.

(2014) Y. Pennacchi et al.   FISH & SHELLFISH IMMUNOLOGY

Comparison of genomic predictions using genomic relationship matrices built with different weighting factors to account for locus-specific variances

(2014) G. Su et al.   JOURNAL OF DAIRY SCIENCE

Genomic prediction in an admixed population of Atlantic salmon (Salmo salar)

(2014) Jørgen ØdegÃ¥rd et al.   Frontiers in Genetics

Amoebic gill disease due to Paramoeba perurans in ballan wrasse (Labrus bergylta)

(2013) Egil Karlsbakk et al.   AQUACULTURE

Immunity to Amoeba

(2013) Barbara Nowak et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Sleeping Giants: Emerging Roles for the Fat Cadherins in Health and Disease

(2013) Elham Sadeqzadeh et al.   MEDICINAL RESEARCH REVIEWS

A Function Accounting for Training Set Size and Marker Density to Model the Average Accuracy of Genomic Prediction

(2013) Malena Erbe et al.   PLoS One

Prediction of Complex Human Traits Using the Genomic Best Linear Unbiased Predictor

(2013) Gustavo de los Campos et al.   PLoS Genetics

Global Gene Transcriptome Analysis in Vaccinated Cattle Revealed a Dominant Role of IL-22 for Protection against Bovine Tuberculosis

(2013) Sabin Bhuju et al.   PLoS Pathogens

Interleukin-18 and IL-18 Binding Protein

(2013) Charles A. Dinarello et al.   Frontiers in Immunology

Genetic variation in parasite resistance of Atlantic salmon to amoebic gill disease over multiple infections

(2012) Peter D. Kube et al.   AQUACULTURE

RNA-Seq and human complex diseases: recent accomplishments and future perspectives

(2012) Valerio Costa et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

Description of an Atlantic salmon (Salmo salar L.) type II interleukin-1 receptor cDNA and analysis of interleukin-1 receptor expression in amoebic gill disease-affected fish

(2012) R.N. Morrison et al.   FISH & SHELLFISH IMMUNOLOGY

Genomic Prediction in Animals and Plants: Simulation of Data, Validation, Reporting, and Benchmarking

(2012) H. D. Daetwyler et al.   GENETICS

Long non-coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat

(2012) Claudia Carrieri et al.   NATURE

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Cell adhesion, inflammation and therapy: Old ideas and a significant step forward

(2011) Roberto González-amaro   ACTA PHARMACOLOGICA SINICA

Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression

(2011) John R Prensner et al.   NATURE BIOTECHNOLOGY

A canine BCAN microdeletion associated with episodic falling syndrome

(2011) Jennifer L. Gill et al.   NEUROBIOLOGY OF DISEASE

GCTA: A Tool for Genome-wide Complex Trait Analysis

(2010) Jian Yang et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Differential induction of inflammatory cytokines by dendritic cells treated with novel TLR-agonist and cytokine based cocktails: targeting dendritic cells in autoimmunity

(2010) Simon S Jensen et al.   Journal of Inflammation-London

The Evolution of Thrombospondins and Their Ligand-Binding Activities

(2010) A. A. Bentley et al.   MOLECULAR BIOLOGY AND EVOLUTION

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Genetic variation of gross gill pathology and survival of Atlantic salmon (Salmo salar L.) during natural amoebic gill disease challenge

(2009) Richard S. Taylor et al.   AQUACULTURE

Gill observations in Atlantic salmon (Salmo salar, L.) during repeated amoebic gill disease (AGD) field exposure and survival challenge

(2009) Richard S. Taylor et al.   AQUACULTURE

Interferon-inducible immunity-related GTPase Irgm1 regulates IFNγ-dependent host defense, lymphocyte survival and autophagy

(2009) Carl G. Feng et al.   Autophagy

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Leishmania major Phosphoglycans Influence the Host Early Immune Response by Modulating Dendritic Cell Functions

(2009) D. Liu et al.   INFECTION AND IMMUNITY

Integrins in immunity

(2009) R. Evans et al.   JOURNAL OF CELL SCIENCE

Balance of Irgm protein activities determines IFN-γ-induced host defense

(2009) Stanley C. Henry et al.   JOURNAL OF LEUKOCYTE BIOLOGY

Posttranslational regulation impacts the fate of duplicated genes

(2009) G. D. Amoutzias et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The role of tenascin-C in tissue injury and tumorigenesis

(2009) Kim S. Midwood et al.   Journal of Cell Communication and Signaling

Resistance to amoebic gill disease (AGD) is characterised by the transcriptional dysregulation of immune and cell cycle pathways

(2008) James W. Wynne et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Living off a fish: A trade-off between parasites and the immune system

(2008) A. Sitjà-Bobadilla   FISH & SHELLFISH IMMUNOLOGY

Transcriptome Analyses of Amoebic Gill Disease-affected Atlantic Salmon (Salmo salar) Tissues Reveal Localized Host Gene Suppression

(2008) James W. Wynne et al.   MARINE BIOTECHNOLOGY

Coordinated down-regulation of the antigen processing machinery in the gills of amoebic gill disease-affected Atlantic salmon (Salmo salar L.)

(2008) N.D. Young et al.   MOLECULAR IMMUNOLOGY