A comparative integrated gene-based linkage and locus ordering by linkage disequilibrium map for the Pacific white shrimp, Litopenaeus vannamei

Applications of genotyping by sequencing in aquaculture breeding and genetics

(2017) Diego Robledo et al.   Reviews in Aquaculture

Comparative genomics analysis of decapod shrimps in the Pancrustacea clade

(2016) Jianbo Yuan et al.   BIOCHEMICAL SYSTEMATICS AND ECOLOGY

Genome survey and high-density genetic map construction provide genomic and genetic resources for the Pacific White Shrimp Litopenaeus vannamei

(2015) Yang Yu et al.   Scientific Reports

Genetic improvement of Pacific white shrimp [Penaeus (Litopenaeus) vannamei]: perspectives for genomic selection

(2015) Héctor Castillo-Juárez et al.   Frontiers in Genetics

Whole Transcriptome Analysis Provides Insights into Molecular Mechanisms for Molting in Litopenaeus vannamei

(2015) Yi Gao et al.   PLoS One

Estimating genotype error rates from high-coverage next-generation sequence data

(2014) Jeffrey D. Wall et al.   GENOME RESEARCH

Development of SNP-genotyping arrays in two shellfish species

(2014) S. Lapègue et al.   Molecular Ecology Resources

SNP Discovery in the Transcriptome of White Pacific Shrimp Litopenaeus vannamei by Next Generation Sequencing

(2014) Yang Yu et al.   PLoS One

Design and Characterization of a 52K SNP Chip for Goats

(2014) Gwenola Tosser-Klopp et al.   PLoS One

The Development of a High Density Linkage Map for Black Tiger Shrimp (Penaeus monodon) Based on cSNPs

(2014) Matthew Baranski et al.   PLoS One

ArkMAP: integrating genomic maps across species and data sources

(2013) Trevor Paterson et al.   BMC BIOINFORMATICS

A high-density SNP genetic linkage map for the silver-lipped pearl oyster, Pinctada maxima: a valuable resource for gene localisation and marker-assisted selection

(2013) David B Jones et al.   BMC GENOMICS

cDNA cloning and expression analysis of myostatin/GDF11 in shrimp, Litopenaeus vannamei

(2013) Zhaoying Qian et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Recent advances of genome mapping and marker-assisted selection in aquaculture

(2013) Gen Hua Yue   FISH AND FISHERIES

Genome-Wide SNP Validation and Mantle Tissue Transcriptome Analysis in the Silver-Lipped Pearl Oyster, Pinctada maxima

(2013) David B. Jones et al.   MARINE BIOTECHNOLOGY

Genetic Map Construction and Quantitative Trait Locus (QTL) Detection of Growth-Related Traits in Litopenaeus vannamei for Selective Breeding Applications

(2013) Farafidy Andriantahina et al.   PLoS One

Transcriptome Analysis of Litopenaeus vannamei in Response to White Spot Syndrome Virus Infection

(2013) Xiaohan Chen et al.   PLoS One

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

(2012) Marcel H. Schulz et al.   BIOINFORMATICS

The role of selective breeding and biosecurity in the prevention of disease in penaeid shrimp aquaculture

(2012) Shaun M. Moss et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

Technical Reproducibility of Genotyping SNP Arrays Used in Genome-Wide Association Studies

(2012) Huixiao Hong et al.   PLoS One

A High Density SNP Array for the Domestic Horse and Extant Perissodactyla: Utility for Association Mapping, Genetic Diversity, and Phylogeny Studies

(2012) Molly E. McCue et al.   PLoS Genetics

Targeted SNP discovery in Atlantic salmon (Salmo salar) genes using a 3'UTR-primed SNP detection approach

(2011) Rune Andreassen et al.   BMC GENOMICS

The development and characterization of a 60K SNP chip for chicken

(2011) Martien AM Groenen et al.   BMC GENOMICS

A dense SNP-based linkage map for Atlantic salmon (Salmo salar) reveals extended chromosome homeologies and striking differences in sex-specific recombination patterns

(2011) Sigbjørn Lien et al.   BMC GENOMICS

Predicting allele frequencies in DNA pools using high density SNP genotyping data

(2010) B. L. Peiris et al.   ANIMAL GENETICS

Evaluation of an Atlantic salmon SNP chip as a genomic tool for the application in a Tasmanian Atlantic salmon (Salmo salar) breeding population

(2010) Sonja Dominik et al.   AQUACULTURE

Assignment of chromosomal locations for unassigned SNPs/scaffolds based on pair-wise linkage disequilibrium estimates

(2010) Mehar S Khatkar et al.   BMC BIOINFORMATICS

Corrigendum

(2010) STEVEN T. KALINOWSKI et al.   MOLECULAR ECOLOGY

A major SNP resource for dissection of phenotypic and genetic variation in Pacific white shrimp (Litopenaeus vannamei)

(2009) D. C. Ciobanu et al.   ANIMAL GENETICS

A gene-based SNP linkage map for pacific white shrimp, Litopenaeus vannamei

(2009) Z.-Q. Du et al.   ANIMAL GENETICS

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Single nucleotide polymorphism discovery in rainbow trout by deep sequencing of a reduced representation library

(2009) Cecilia Sánchez et al.   BMC GENOMICS

COLONY: a program for parentage and sibship inference from multilocus genotype data

(2009) OWEN R. JONES et al.   Molecular Ecology Resources

Development and Characterization of a High Density SNP Genotyping Assay for Cattle

(2009) Lakshmi K. Matukumalli et al.   PLoS One

Design of a High Density SNP Genotyping Assay in the Pig Using SNPs Identified and Characterized by Next Generation Sequencing Technology

(2009) Antonio M. Ramos et al.   PLoS One

Extent of genome-wide linkage disequilibrium in Australian Holstein-Friesian cattle based on a high-density SNP panel

(2008) Mehar S Khatkar et al.   BMC GENOMICS

Quality assessment parameters for EST-derived SNPs from catfish

(2008) Shaolin Wang et al.   BMC GENOMICS

High-Density Linkage Maps and Sex-Linked Markers for the Black Tiger Shrimp ( Penaeus monodon )

(2008) Jan Staelens et al.   GENETICS

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH