Predicting Growth Traits with Genomic Selection Methods in Zhikong Scallop (Chlamys farreri)

Technical note: an R package for fitting sparse neural networks with application in animal breeding1

(2018) Yangfan Wang et al.   JOURNAL OF ANIMAL SCIENCE

Genomic Selection Using BayesCπ and GBLUP for Resistance Against Edwardsiella tarda in Japanese Flounder (Paralichthys olivaceus)

(2018) Yang Liu et al.   MARINE BIOTECHNOLOGY

Identification, Characterization, and Mapping of a Novel SNP Associated with Body Color Transparency in Juvenile Red Sea Bream (Pagrus major)

(2018) Eitaro Sawayama et al.   MARINE BIOTECHNOLOGY

Sea cucumber genome provides insights into saponin biosynthesis and aestivation regulation

(2018) Yuli Li et al.   Cell Discovery

Population Genomics Reveals Genetic Divergence and Adaptive Differentiation of Chinese Sea Bass (Lateolabrax maculatus)

(2017) Yunfeng Zhao et al.   MARINE BIOTECHNOLOGY

Identification of Quantitative Trait Loci for Resistance to RSIVD in Red Sea Bream (Pagrus major)

(2017) Eitaro Sawayama et al.   MARINE BIOTECHNOLOGY

Genome-Wide QTL Analysis Identified Significant Associations Between Hypoxia Tolerance and Mutations in the GPR132 and ABCG4 Genes in Nile Tilapia

(2017) Hong Lian Li et al.   MARINE BIOTECHNOLOGY

QTL Mapping for Resistance to Iridovirus in Asian Seabass Using Genotyping-by-Sequencing

(2017) Le Wang et al.   MARINE BIOTECHNOLOGY

Mapping QTL for Omega-3 Content in Hybrid Saline Tilapia

(2017) Grace Lin et al.   MARINE BIOTECHNOLOGY

Genome-Wide Association Study Identifies Loci Associated with Resistance to Viral Nervous Necrosis Disease in Asian Seabass

(2017) Le Wang et al.   MARINE BIOTECHNOLOGY

Genome-Wide Association Study Reveals Multiple Novel QTL Associated with Low Oxygen Tolerance in Hybrid Catfish

(2017) Xiaoxiao Zhong et al.   MARINE BIOTECHNOLOGY

Scallop genome reveals molecular adaptations to semi-sessile life and neurotoxins

(2017) Yuli Li et al.   Nature Communications

Scallop genome provides insights into evolution of bilaterian karyotype and development

(2017) Shi Wang et al.   Nature Ecology & Evolution

Genomic Selection Using Extreme Phenotypes and Pre-Selection of SNPs in Large Yellow Croaker (Larimichthys crocea)

(2016) Linsong Dong et al.   MARINE BIOTECHNOLOGY

Serial sequencing of isolength RAD tags for cost-efficient genome-wide profiling of genetic and epigenetic variations

(2016) Shi Wang et al.   Nature Protocols

Evaluation of Genome-Enabled Selection for Bacterial Cold Water Disease Resistance Using Progeny Performance Data in Rainbow Trout: Insights on Genotyping Methods and Genomic Prediction Models

(2016) Roger L. Vallejo et al.   Frontiers in Genetics

Evaluation of the 2b-RAD method for genomic selection in scallop breeding

(2016) Jinzhuang Dou et al.   Scientific Reports

Validation of markers with non-additive effects on milk yield and fertility in Holstein and Jersey cows

(2015) Hassan Aliloo et al.   BMC GENETICS

Genome wide association and genomic prediction for growth traits in juvenile farmed Atlantic salmon using a high density SNP array

(2015) Hsin-Yuan Tsai et al.   BMC GENOMICS

Identification of Quantitative Trait Loci Associated with the Skeletal Deformity LSK complex in Gilthead Seabream (Sparus aurata L.)

(2015) Davinia Negrín-Báez et al.   MARINE BIOTECHNOLOGY

Mapping QTL for Resistance Against Viral Nervous Necrosis Disease in Asian Seabass

(2015) Peng Liu et al.   MARINE BIOTECHNOLOGY

Identification of Single-Locus PCR-Based Markers Linked to Shell Background Color in the Pacific Oyster (Crassostrea gigas)

(2015) Jianlong Ge et al.   MARINE BIOTECHNOLOGY

Detection of Growth-Related Quantitative Trait Loci and High-Resolution Genetic Linkage Maps Using Simple Sequence Repeat Markers in the Kelp Grouper (Epinephelus bruneus)

(2015) Kanonkporn Kessuwan et al.   MARINE BIOTECHNOLOGY

Genomic selection: genome-wide prediction in plant improvement

(2014) Zeratsion Abera Desta et al.   TRENDS IN PLANT SCIENCE

Parametric and Nonparametric Statistical Methods for Genomic Selection of Traits with Additive and Epistatic Genetic Architectures

(2014) Réka Howard et al.   G3-Genes Genomes Genetics

High-Resolution Linkage and Quantitative Trait Locus Mapping Aided by Genome Survey Sequencing: Building Up An Integrative Genomic Framework for a Bivalve Mollusc

(2013) W. Jiao et al.   DNA RESEARCH

On the Additive and Dominant Variance and Covariance of Individuals Within the Genomic Selection Scope

(2013) Z. G. Vitezica et al.   GENETICS

Genomic prediction in CIMMYT maize and wheat breeding programs

(2013) J Crossa et al.   HEREDITY

2b-RAD: a simple and flexible method for genome-wide genotyping

(2012) Shi Wang et al.   NATURE METHODS

Predicting complex quantitative traits with Bayesian neural networks: a case study with Jersey cows and wheat

(2011) Daniel Gianola et al.   BMC GENETICS

Genomic selection in plant breeding: from theory to practice

(2011) J.-L. Jannink et al.   Briefings in Functional Genomics

Genomic Selection in Plant Breeding: A Comparison of Models

(2011) Nicolas Heslot et al.   CROP SCIENCE

GCTA: A Tool for Genome-wide Complex Trait Analysis

(2010) Jian Yang et al.   AMERICAN JOURNAL OF HUMAN GENETICS

The Impact of Genetic Architecture on Genome-Wide Evaluation Methods

(2010) H. D. Daetwyler et al.   GENETICS

A Unified Approach to Genotype Imputation and Haplotype-Phase Inference for Large Data Sets of Trios and Unrelated Individuals

(2009) Brian L. Browning et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Divergent selection and realized heritability for growth in the Japanese scallop, Patinopecten yessoensis Jay

(2009) Jun Liang et al.   AQUACULTURE RESEARCH

Predicting Quantitative Traits With Regression Models for Dense Molecular Markers and Pedigree

(2009) G. de los Campos et al.   GENETICS

Factors Affecting Accuracy From Genomic Selection in Populations Derived From Multiple Inbred Lines: A Barley Case Study

(2009) S. Zhong et al.   GENETICS

Reproducing kernel Hilbert spaces regression: A general framework for genetic evaluation1

(2009) G. de los Campos et al.   JOURNAL OF ANIMAL SCIENCE

Invited review: Genomic selection in dairy cattle: Progress and challenges

(2009) B.J. Hayes et al.   JOURNAL OF DAIRY SCIENCE

Mapping genes for complex traits in domestic animals and their use in breeding programmes

(2009) Michael E. Goddard et al.   NATURE REVIEWS GENETICS

Nonparametric Methods for Incorporating Genomic Information Into Genetic Evaluations: An Application to Mortality in Broilers

(2008) O. Gonzalez-Recio et al.   GENETICS

Efficient Methods to Compute Genomic Predictions

(2008) P.M. VanRaden   JOURNAL OF DAIRY SCIENCE