Construction and evaluation of a high-density SNP array for the Pacific oyster (Crassostrea gigas)

Summer mortalities and detection of ostreid herpesvirus microvariant in Pacific oyster Crassostrea gigas in Sweden and Norway

(2016) S Mortensen et al.   DISEASES OF AQUATIC ORGANISMS

Introduced Pacific oystersCrassostrea gigasin South Africa: demographic change, genetic diversity and body condition

(2015) J Keightley et al.   AFRICAN JOURNAL OF MARINE SCIENCE

Development and preliminary evaluation of a 90 K Axiom® SNP array for the allo-octoploid cultivated strawberry Fragaria × ananassa

(2015) Nahla V Bassil et al.   BMC GENOMICS

Assessment of growth, genotoxic responses and expression of stress related genes in the Pacific oyster Crassostrea gigas following chronic exposure to ionizing radiation

(2015) Alexandre Devos et al.   MARINE POLLUTION BULLETIN

Development, validation and genetic analysis of a large soybean SNP genotyping array

(2015) Yun-Gyeong Lee et al.   PLANT JOURNAL

Single-copy gene based 50 K SNP chip for genetic studies and molecular breeding in rice

(2015) Nisha Singh et al.   Scientific Reports

Development and evaluation of the first high-throughput SNP array for common carp (Cyprinus carpio)

(2014) Jian Xu et al.   BMC GENOMICS

Development and validation of a high density SNP genotyping array for Atlantic salmon (Salmo salar)

(2014) Ross D Houston et al.   BMC GENOMICS

A powerful tool for genome analysis in maize: development and evaluation of the high density 600 k SNP genotyping array

(2014) Sandra Unterseer et al.   BMC GENOMICS

The development and characterization of a 57K single nucleotide polymorphism array for rainbow trout

(2014) Y. Palti et al.   Molecular Ecology Resources

Discovery and validation of genic single nucleotide polymorphisms in the Pacific oysterCrassostrea gigas

(2014) Jiafeng Wang et al.   Molecular Ecology Resources

Development of SNP-genotyping arrays in two shellfish species

(2014) S. Lapègue et al.   Molecular Ecology Resources

Development of a high density 600K SNP genotyping array for chicken

(2013) Andreas Kranis et al.   BMC GENOMICS

Comparative genetic diversity of wild and hatchery-produced Pacific oyster (Crassostrea gigas) populations in Korea using multiplex PCR assays with nine polymorphic microsatellite markers

(2013) Hye Suck An et al.   Genes & Genomics

Effects of native macroalgae and predators on survival, condition and growth of non-indigenous Pacific oysters (Crassostrea gigas)

(2013) Judith Kochmann et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Development and Validation of Single-nucleotide Polymorphism Markers in the Pacific Oyster,Crassostrea gigas,Using High-resolution Melting Analysis

(2013) Xiaoxiao Zhong et al.   JOURNAL OF THE WORLD AQUACULTURE SOCIETY

Sequence Polymorphism and Expression Variability of Crassostrea gigas Immune Related Genes Discriminate Two Oyster Lines Contrasted in Term of Resistance to Summer Mortalities

(2013) Paulina Schmitt et al.   PLoS One

Mussel and oyster culture in Saldanha Bay, South Africa: potential for sustainable growth, development and employment creation

(2013) David Olivier et al.   Food Security

Genetic structure of wild European populations of the invasive Pacific oyster Crassostrea gigas due to aquaculture practices

(2012) Anne-Leila Meistertzheim et al.   MARINE BIOLOGY

The oyster genome reveals stress adaptation and complexity of shell formation

(2012) Guofan Zhang et al.   NATURE

A High Density SNP Array for the Domestic Horse and Extant Perissodactyla: Utility for Association Mapping, Genetic Diversity, and Phylogeny Studies

(2012) Molly E. McCue et al.   PLoS Genetics

Detection of Type 1 Ostreid Herpes variant (OsHV-1 μvar) with no associated mortality in French-origin Pacific cupped oyster Crassostrea gigas farmed in Italy

(2011) William G. Dundon et al.   AQUACULTURE

First report of OsHV-1 microvar in Pacific oyster (Crassostrea gigas) cultured in Spain

(2011) A. Roque et al.   AQUACULTURE

Quantitative Trait Locus Analysis of Stage-Specific Inbreeding Depression in the Pacific OysterCrassostrea gigas

(2011) Louis V. Plough et al.   GENETICS

A single bio-energetics growth and reproduction model for the oyster Crassostrea gigas in six Atlantic ecosystems

(2011) Marianne Alunno-Bruscia et al.   JOURNAL OF SEA RESEARCH

Classification of a Common Cupped Oyster from Southern China

(2011) Haiyan Wang et al.   JOURNAL OF SHELLFISH RESEARCH

Microarray Analysis Highlights Immune Response of Pacific Oysters as a Determinant of Resistance to Summer Mortality

(2011) Elodie Fleury et al.   MARINE BIOTECHNOLOGY

Genotype and SNP calling from next-generation sequencing data

(2011) Rasmus Nielsen et al.   NATURE REVIEWS GENETICS

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Accounting for Population Stratification in Practice: A Comparison of the Main Strategies Dedicated to Genome-Wide Association Studies

(2011) Matthieu Bouaziz et al.   PLoS One

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Massive settlements of the Pacific oyster, Crassostrea gigas, in Scandinavia

(2009) Anna-Lisa Wrange et al.   BIOLOGICAL INVASIONS

Simple Sequence Repeat Polymorphisms (SSRPs) for Evaluation of Molecular Diversity and Germplasm Classification of Minor Crops

(2009) Yong-Jin Park et al.   MOLECULES

Development and Characterization of a High Density SNP Genotyping Assay for Cattle

(2009) Lakshmi K. Matukumalli et al.   PLoS One

Design of a High Density SNP Genotyping Assay in the Pig Using SNPs Identified and Characterized by Next Generation Sequencing Technology

(2009) Antonio M. Ramos et al.   PLoS One

Population dynamics of the invasive Pacific oyster Crassostrea gigas during the early stages of an outbreak in the Wadden Sea (Germany)

(2008) Andreas Schmidt et al.   HELGOLAND MARINE RESEARCH