Modular (de)construction of complex bacterial phenotypes by CRISPR/nCas9-assisted, multiplex cytidine base-editing
Published 2022 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Modular (de)construction of complex bacterial phenotypes by CRISPR/nCas9-assisted, multiplex cytidine base-editing
Authors
Keywords
-
Journal
Nature Communications
Volume 13, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2022-05-31
DOI
10.1038/s41467-022-30780-z
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Merging automation and fundamental discovery into the design–build–test–learn cycle of nontraditional microbes
- (2022) Nicolás Gurdo et al. TRENDS IN BIOTECHNOLOGY
- Reconfiguration of metabolic fluxes in Pseudomonas putida as a response to sub-lethal oxidative stress
- (2021) Pablo I. Nikel et al. ISME Journal
- Twelve years of SAMtools and BCFtools
- (2021) Petr Danecek et al. GigaScience
- Production of itaconic acid from alkali pretreated lignin by dynamic two stage bioconversion
- (2021) Joshua R. Elmore et al. Nature Communications
- Spatiotemporal Manipulation of the Mismatch Repair System of Pseudomonas putida Accelerates Phenotype Emergence
- (2021) Lorena Fernández-Cabezón et al. ACS Synthetic Biology
- Cofactor Specificity of Glucose-6-Phosphate Dehydrogenase Isozymes in Pseudomonas putida Reveals a General Principle Underlying Glycolytic Strategies in Bacteria
- (2021) Daniel Christoph Volke et al. mSystems
- Model-guided dynamic control of essential metabolic nodes boosts acetyl-coenzyme A–dependent bioproduction in rewired Pseudomonas putida
- (2021) Ekaterina Kozaeva et al. METABOLIC ENGINEERING
- Controllable genome editing with split-engineered base editors
- (2021) Kiara N. Berríos et al. Nature Chemical Biology
- Gene editing enables rapid engineering of complex antibiotic assembly lines
- (2021) Wei Li Thong et al. Nature Communications
- Directed evolution of adenine base editors with increased activity and therapeutic application
- (2020) Nicole M. Gaudelli et al. NATURE BIOTECHNOLOGY
- Pseudomonas putida KT2440 is naturally endowed to withstand industrial-scale stress conditions
- (2020) Andreas Ankenbauer et al. Microbial Biotechnology
- Industrial biotechnology of Pseudomonas putida: advances and prospects
- (2020) Anna Weimer et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- CRISPR with a Happy Ending: Non‐Templated DNA Repair for Prokaryotic Genome Engineering
- (2020) Max Finger‐Bou et al. Biotechnology Journal
- Genome editing with CRISPR–Cas nucleases, base editors, transposases and prime editors
- (2020) Andrew V. Anzalone et al. NATURE BIOTECHNOLOGY
- Pseudomonas putida
- (2020) Daniel C. Volke et al. TRENDS IN MICROBIOLOGY
- In Vivo Selection for Formate Dehydrogenases with High Efficiency and Specificity toward NADP+
- (2020) Liliana Calzadiaz-Ramirez et al. ACS Catalysis
- CRISPR-Assisted Multiplex Base Editing System in Pseudomonas putida KT2440
- (2020) Jun Sun et al. Frontiers in Bioengineering and Biotechnology
- Engineering Native and Synthetic Pathways in Pseudomonas Putida for the Production of Tailored Polyhydroxyalkanoates ‡
- (2020) Mariela P. Mezzina et al. Biotechnology Journal
- Targeted mutagenesis of multiple chromosomal regions in microbes
- (2020) Bálint Csörgő et al. CURRENT OPINION IN MICROBIOLOGY
- Application of different types of CRISPR/Cas-based systems in bacteria
- (2020) Zhenquan Liu et al. Microbial Cell Factories
- Enabling one-pot Golden Gate assemblies of unprecedented complexity using data-optimized assembly design
- (2020) John M. Pryor et al. PLoS One
- A fluoride-responsive genetic circuit enables in vivo biofluorination in engineered Pseudomonas putida
- (2020) Patricia Calero et al. Nature Communications
- Metabolic engineering of Pseudomonas putida KT2440 for high-yield production of protocatechuic acid
- (2020) Jin Li et al. BIORESOURCE TECHNOLOGY
- Lignin valorization by bacterial genus Pseudomonas: State-of-the-art review and prospects
- (2020) Manish Kumar et al. BIORESOURCE TECHNOLOGY
- CRISPR-derived genome editing technologies for metabolic engineering
- (2020) Keiji Nishida et al. METABOLIC ENGINEERING
- A Cas-embedding strategy for minimizing off-target effects of DNA base editors
- (2020) Yajing Liu et al. Nature Communications
- Accelerated genome engineering of Pseudomonas putida by I-Sce I―mediated recombination and CRISPR-Cas9 counterselection
- (2019) Nicolas T. Wirth et al. Microbial Biotechnology
- A Comparison of Microbial Genome Web Portals
- (2019) Peter D. Karp et al. Frontiers in Microbiology
- CRISPR/Cas-Mediated Base Editing: Technical Considerations and Practical Applications
- (2019) Kutubuddin A. Molla et al. TRENDS IN BIOTECHNOLOGY
- Off-Target Editing by CRISPR-Guided DNA Base Editors
- (2019) SeHee Park et al. BIOCHEMISTRY
- Highly efficient DSB-free base editing for streptomycetes with CRISPR-BEST
- (2019) Yaojun Tong et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Mismatch repair hierarchy of Pseudomonas putida revealed by mutagenic ssDNA recombineering of the pyrF gene
- (2019) Tomas Aparicio et al. ENVIRONMENTAL MICROBIOLOGY
- Specificity and Efficiency of the Uracil DNA Glycosylase-Mediated Strand Cleavage Surveyed on Large Sequence Libraries
- (2019) Kathrin Hölz et al. Scientific Reports
- Patscanui: an intuitive web interface for searching patterns in DNA and protein data
- (2018) Kai Blin et al. NUCLEIC ACIDS RESEARCH
- Advances in Industrial Biotechnology Using CRISPR-Cas Systems
- (2018) Paul D. Donohoue et al. TRENDS IN BIOTECHNOLOGY
- The CRISPR tool kit for genome editing and beyond
- (2018) Mazhar Adli Nature Communications
- Reserve Flux Capacity in the Pentose Phosphate Pathway Enables Escherichia coli 's Rapid Response to Oxidative Stress
- (2018) Dimitris Christodoulou et al. Cell Systems
- Deaminase-mediated multiplex genome editing in Escherichia coli
- (2018) Satomi Banno et al. Nature Microbiology
- The Metabolic Redox Regime of Pseudomonas putida Tunes Its Evolvability toward Novel Xenobiotic Substrates
- (2018) Özlem Akkaya et al. mBio
- Base editing: precision chemistry on the genome and transcriptome of living cells
- (2018) Holly A. Rees et al. NATURE REVIEWS GENETICS
- Comprehensive Profiling of Four Base Overhang Ligation Fidelity by T4 DNA Ligase and Application to DNA Assembly
- (2018) Vladimir Potapov et al. ACS Synthetic Biology
- Biotechnological production of aromatic compounds of the extended shikimate pathway from renewable biomass
- (2017) Jin-Ho Lee et al. JOURNAL OF BIOTECHNOLOGY
- Programmable base editing of A•T to G•C in genomic DNA without DNA cleavage
- (2017) Nicole M. Gaudelli et al. NATURE
- Characterizing a thermostable Cas9 for bacterial genome editing and silencing
- (2017) Ioannis Mougiakos et al. Nature Communications
- Bacillus SEVA siblings: A Golden Gate-based toolbox to create personalized integrative vectors for Bacillus subtilis
- (2017) Jara Radeck et al. Scientific Reports
- Multiplexed CRISPR/Cas9 Genome Editing and Gene Regulation Using Csy4 in Saccharomyces cerevisiae
- (2017) Raphael Ferreira et al. ACS Synthetic Biology
- Evolution of Pseudomonas aeruginosa Antimicrobial Resistance and Fitness under Low and High Mutation Rates
- (2016) Gabriel Cabot et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- The Ssr protein (T1E_1405) fromPseudomonas putidaDOT-T1E enables oligonucleotide-based recombineering in platform strainP. putidaEM42
- (2016) Tomás Aparicio et al. Biotechnology Journal
- Pyridine nucleotide transhydrogenases enable redox balance of Pseudomonas putida during biodegradation of aromatic compounds
- (2016) Pablo I. Nikel et al. ENVIRONMENTAL MICROBIOLOGY
- The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis
- (2016) Eugeni Belda et al. ENVIRONMENTAL MICROBIOLOGY
- Deregulation of S-adenosylmethionine biosynthesis and regeneration improves methylation in the E. coli de novo vanillin biosynthesis pathway
- (2016) Aditya M. Kunjapur et al. Microbial Cell Factories
- Programmable editing of a target base in genomic DNA without double-stranded DNA cleavage
- (2016) Alexis C. Komor et al. NATURE
- Targeted nucleotide editing using hybrid prokaryotic and vertebrate adaptive immune systems
- (2016) K. Nishida et al. SCIENCE
- The Ssr protein (T1E_1405) fromPseudomonas putidaDOT-T1E enables oligonucleotide-based recombineering in platform strainP. putidaEM42
- (2016) Tomás Aparicio et al. Biotechnology Journal
- Pseudomonas putidaKT2440 Strain Metabolizes Glucose through a Cycle Formed by Enzymes of the Entner-Doudoroff, Embden-Meyerhof-Parnas, and Pentose Phosphate Pathways
- (2015) Pablo I. Nikel et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Engineered CRISPR-Cas9 nucleases with altered PAM specificities
- (2015) Benjamin P. Kleinstiver et al. NATURE
- Bricks and blueprints: methods and standards for DNA assembly
- (2015) Arturo Casini et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Tn7-Based Device for Calibrated Heterologous Gene Expression in Pseudomonas putida
- (2015) Sebastian Zobel et al. ACS Synthetic Biology
- The three major types of CRISPR-Cas systems function independently in CRISPR RNA biogenesis inStreptococcus thermophilus
- (2014) Jason Carte et al. MOLECULAR MICROBIOLOGY
- Dimeric CRISPR RNA-guided FokI nucleases for highly specific genome editing
- (2014) Shengdar Q Tsai et al. NATURE BIOTECHNOLOGY
- The Standard European Vector Architecture (SEVA): a coherent platform for the analysis and deployment of complex prokaryotic phenotypes
- (2012) Rafael Silva-Rocha et al. NUCLEIC ACIDS RESEARCH
- Mechanism of substrate selection by a highly specific CRISPR endoribonuclease
- (2012) S. H. Sternberg et al. RNA
- A Programmable Dual-RNA-Guided DNA Endonuclease in Adaptive Bacterial Immunity
- (2012) M. Jinek et al. SCIENCE
- Isocitrate dehydrogenase isozymes from a psychrotrophic bacterium, Pseudomonas psychrophila
- (2010) Shougo Matsuo et al. ARCHIVES OF MICROBIOLOGY
- ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data
- (2010) K. Wang et al. NUCLEIC ACIDS RESEARCH
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Redundancy of Enzymes for Formaldehyde Detoxification in Pseudomonas putida
- (2009) A. Roca et al. JOURNAL OF BACTERIOLOGY
- Different Biochemical Mechanisms Ensure Network-Wide Balancing of Reducing Equivalents in Microbial Metabolism
- (2009) T. Fuhrer et al. JOURNAL OF BACTERIOLOGY
- Programming cells by multiplex genome engineering and accelerated evolution
- (2009) Harris H. Wang et al. NATURE
- Deciphering the genetic determinants for aerobic nicotinic acid degradation: The nic cluster from Pseudomonas putida KT2440
- (2008) J. I. Jimenez et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now