Pyridine nucleotide transhydrogenases enable redox balance of Pseudomonas putida during biodegradation of aromatic compounds

From dirt to industrial applications: Pseudomonas putida as a Synthetic Biology chassis for hosting harsh biochemical reactions

(2016) Pablo I Nikel et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis

(2016) Eugeni Belda et al.   ENVIRONMENTAL MICROBIOLOGY

13 C metabolic flux analysis of the extremely thermophilic, fast growing, xylose-utilizing Geobacillus strain LC300

(2016) Lauren T. Cordova et al.   METABOLIC ENGINEERING

Pyruvate dehydrogenase complex and nicotinamide nucleotide transhydrogenase constitute an energy-consuming redox circuit

(2015) Kelsey H. Fisher-Wellman et al.   BIOCHEMICAL JOURNAL

Pseudomonas putida mt-2 tolerates reactive oxygen species generated during matric stress by inducing a major oxidative defense response

(2015) Nanna B. Svenningsen et al.   BMC MICROBIOLOGY

Reversal of Mitochondrial Transhydrogenase Causes Oxidative Stress in Heart Failure

(2015) Alexander G. Nickel et al.   Cell Metabolism

The RNA chaperone Hfq enables the environmental stress tolerance super-phenotype of P seudomonas putida

(2015) Alejandro Arce-Rodríguez et al.   ENVIRONMENTAL MICROBIOLOGY

Pseudomonas putidaKT2440 Strain Metabolizes Glucose through a Cycle Formed by Enzymes of the Entner-Doudoroff, Embden-Meyerhof-Parnas, and Pentose Phosphate Pathways

(2015) Pablo I. Nikel et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

High speed BLASTN: an accelerated MegaBLAST search tool

(2015) Ying Chen et al.   NUCLEIC ACIDS RESEARCH

Enhanced annotations and features for comparing thousands ofPseudomonasgenomes in the Pseudomonas genome database

(2015) Geoffrey L. Winsor et al.   NUCLEIC ACIDS RESEARCH

Transhydrogenase Promotes the Robustness and Evolvability of E. coli Deficient in NADPH Production

(2015) Hsin-Hung Chou et al.   PLoS Genetics

NADPH-generating systems in bacteria and archaea

(2015) Sebastiaan K. Spaans et al.   Frontiers in Microbiology

Quantifying NAD(P)H production in the upper Entner-Doudoroff pathway from Pseudomonas putida KT2440

(2015) Karel Olavarria et al.   FEBS Open Bio

Oxidative stress response in Pseudomonas putida

(2014) Jisun Kim et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Biotechnological domestication of pseudomonads using synthetic biology

(2014) Pablo I. Nikel et al.   NATURE REVIEWS MICROBIOLOGY

CDD: NCBI's conserved domain database

(2014) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Antibiotics induce redox-related physiological alterations as part of their lethality

(2014) D. J. Dwyer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Engineering of NADPH regenerators in Escherichia coli for enhanced biotransformation

(2013) Won-Heong Lee et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Metabolic engineering and transhydrogenase effects on NADPH availability inescherichia coli

(2013) Joanna Jan et al.   BIOTECHNOLOGY PROGRESS

The metabolic cost of flagellar motion inPseudomonas putida KT2440

(2013) Esteban Martínez-García et al.   ENVIRONMENTAL MICROBIOLOGY

Metabolic and regulatory rearrangements underlying glycerol metabolism inPseudomonas putida KT2440

(2013) Pablo I. Nikel et al.   ENVIRONMENTAL MICROBIOLOGY

The private life of environmental bacteria: pollutant biodegradation at the single cell level

(2013) Pablo Iván Nikel et al.   ENVIRONMENTAL MICROBIOLOGY

Accumulation of inorganic polyphosphate enables stress endurance and catalytic vigour in Pseudomonas putida KT2440

(2013) Pablo I Nikel et al.   Microbial Cell Factories

Why are chlorinated pollutants so difficult to degrade aerobically? Redox stress limits 1,3-dichloprop-1-ene metabolism by Pseudomonas pavonaceae

(2013) P. I. Nikel et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Transcriptomic fingerprinting ofPseudomonas putidaunder alternative physiological regimes

(2013) Juhyun Kim et al.   Environmental Microbiology Reports

Endogenous Stress Caused by Faulty Oxidation Reactions Fosters Evolution of 2,4-Dinitrotoluene-Degrading Bacteria

(2013) Danilo Pérez-Pantoja et al.   PLoS Genetics

Evolution after Introduction of a Novel Metabolic Pathway Consistently Leads to Restoration of Wild-Type Physiology

(2013) Sean Michael Carroll et al.   PLoS Genetics

Comparative proteomic analysis reveals mechanistic insights into Pseudomonas putida F1 growth on benzoate and citrate

(2013) Manolis Mandalakis et al.   AMB Express

Industrial biotechnology of Pseudomonas putida and related species

(2012) Ignacio Poblete-Castro et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The Entner-Doudoroff pathway empowersPseudomonas putida KT2440 with a high tolerance to oxidative stress

(2012) Max Chavarría et al.   ENVIRONMENTAL MICROBIOLOGY

Responses of Pseudomonas putida to toxic aromatic carbon sources

(2012) Tino Krell et al.   JOURNAL OF BIOTECHNOLOGY

Implantation of unmarked regulatory and metabolic modules in Gram-negative bacteria with specialised mini-transposon delivery vectors

(2012) Pablo I. Nikel et al.   JOURNAL OF BIOTECHNOLOGY

Engineering an anaerobic metabolic regime in Pseudomonas putida KT2440 for the anoxic biodegradation of 1,3-dichloroprop-1-ene

(2012) Pablo I. Nikel et al.   METABOLIC ENGINEERING

The Standard European Vector Architecture (SEVA): a coherent platform for the analysis and deployment of complex prokaryotic phenotypes

(2012) Rafael Silva-Rocha et al.   NUCLEIC ACIDS RESEARCH

Response of Pseudomonas putida KT2440 to Increased NADH and ATP Demand

(2011) Birgitta E. Ebert et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Engineering multiple genomic deletions in Gram-negative bacteria: analysis of the multi-resistant antibiotic profile of Pseudomonas putida KT2440

(2011) Esteban Martínez-García et al.   ENVIRONMENTAL MICROBIOLOGY

Characterization of a Cr(VI)-sensitive Pseudomonas corrugata 28 mutant impaired in a pyridine nucleotide transhydrogenase gene

(2011) Francesca Decorosi et al.   RESEARCH IN MICROBIOLOGY

Redox Biocatalysis and Metabolism: Molecular Mechanisms and Metabolic Network Analysis

(2010) Lars M. Blank et al.   ANTIOXIDANTS & REDOX SIGNALING

Metabolic networks to combat oxidative stress in Pseudomonas fluorescens

(2010) Ryan J. Mailloux et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Metabolic and Transcriptional Response to Cofactor Perturbations in Escherichia coli

(2010) Anders K. Holm et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Different Biochemical Mechanisms Ensure Network-Wide Balancing of Reducing Equivalents in Microbial Metabolism

(2009) T. Fuhrer et al.   JOURNAL OF BACTERIOLOGY

In Vitro and In Vivo Interactions of Ferredoxin-NADP+ Reductases in Pseudomonas putida

(2009) Jinki Yeom et al.   JOURNAL OF BIOCHEMISTRY

NADH Availability Limits Asymmetric Biocatalytic Epoxidation in a Growing Recombinant Escherichia coli Strain

(2008) B. Buhler et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metabolic response of Pseudomonas putida during redox biocatalysis in the presence of a second octanol phase

(2008) Lars M. Blank et al.   FEBS Journal

Escherichia coliYqhD Exhibits Aldehyde Reductase Activity and Protects from the Harmful Effect of Lipid Peroxidation-derived Aldehydes

(2008) José Manuel Pérez et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

OperonDB: a comprehensive database of predicted operons in microbial genomes

(2008) M. Pertea et al.   NUCLEIC ACIDS RESEARCH