The ecological clusters of soil organisms drive the ecosystem multifunctionality under long-term fertilization

Fertilization alters protistan consumers and parasites in crop‐associated microbiomes

(2021) Anqi Sun et al.   ENVIRONMENTAL MICROBIOLOGY

Can We Use Functional Annotation of Prokaryotic Taxa (FAPROTAX) to Assign the Ecological Functions of Soil Bacteria?

(2021) Chakriya Sansupa et al.   Applied Sciences-Basel

Deciphering Potential Roles of Earthworms in Mitigation of Antibiotic Resistance in the Soils from Diverse Ecosystems

(2021) Dong Zhu et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Functional redundancy and specific taxa modulate the contribution of prokaryotic diversity and composition to multifunctionality

(2021) Yan Li et al.   MOLECULAR ECOLOGY

Protists as main indicators and determinants of plant performance

(2021) Sai Guo et al.   Microbiome

Diversity and co-occurrence network modularization of bacterial communities determine soil fertility and crop yields in arid fertigation agroecosystems

(2021) Zhencheng Ye et al.   BIOLOGY AND FERTILITY OF SOILS

Long-term manure application enhances the stability of aggregates and aggregate-associated carbon by regulating soil physicochemical characteristics

(2021) Yang Zhang et al.   CATENA

Metagenomic insights into nitrogen and phosphorus cycling at the soil aggregate scale driven by organic material amendments

(2021) Xingjie Wu et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Effects of nano- or microplastic exposure combined with arsenic on soil bacterial, fungal, and protistan communities

(2021) Dong Zhu et al.   CHEMOSPHERE

Insights into the roles of fungi and protist in the giant panda gut microbiome and antibiotic resistome

(2021) Dong Zhu et al.   ENVIRONMENT INTERNATIONAL

Multiple elements of soil biodiversity drive ecosystem functions across biomes

(2020) Manuel Delgado-Baquerizo et al.   Nature Ecology & Evolution

Multifunctionality of biocrusts is positively predicted by network topologies consistent with interspecies facilitation

(2020) Hua Li et al.   MOLECULAR ECOLOGY

Fertilization changes soil microbiome functioning, especially phagotrophic protists

(2020) Zhi-Bo Zhao et al.   SOIL BIOLOGY & BIOCHEMISTRY

Meta-analysis of the impacts of global change factors on soil microbial diversity and functionality

(2020) Zhenghu Zhou et al.   Nature Communications

Long-term fertilization rather than plant species shapes rhizosphere and bulk soil prokaryotic communities in agroecosystems

(2020) Mikhail V. Semenov et al.   APPLIED SOIL ECOLOGY

Manure application increases microbiome complexity in soil aggregate fractions: Results of an 18-year field experiment

(2020) Guiping Ye et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Organic amendments drive shifts in microbial community structure and keystone taxa which increase C mineralization across aggregate size classes

(2020) Xiaoyue Wang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Protist communities are more sensitive to nitrogen fertilization than other microorganisms in diverse agricultural soils

(2019) Zhi-Bo Zhao et al.   Microbiome

Linking soil microbial biomass and enzyme activities to long-term manure applications and their nonlinear legacy

(2019) Newton Z. Lupwayi et al.   PEDOBIOLOGIA

Responses of soil fungal diversity and community composition to long-term fertilization: Field experiment in an acidic Ultisol and literature synthesis

(2019) Guiping Ye et al.   APPLIED SOIL ECOLOGY

Long-term manure application increases soil organic matter and aggregation, and alters microbial community structure and keystone taxa

(2019) Yongxin Lin et al.   SOIL BIOLOGY & BIOCHEMISTRY

Fungal-bacterial diversity and microbiome complexity predict ecosystem functioning

(2019) Cameron Wagg et al.   Nature Communications

Organic amendment strengthens interkingdom associations in the soil and rhizosphere of barley (Hordeum vulgare)

(2019) Afnan K.A. Suleiman et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Rare microbial taxa as the major drivers of ecosystem multifunctionality in long-term fertilized soils

(2019) Qing-Lin Chen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Correlation Coefficients

(2018) Patrick Schober et al.   ANESTHESIA AND ANALGESIA

Ecological drivers of soil microbial diversity and soil biological networks in the Southern Hemisphere

(2018) Manuel Delgado-Baquerizo et al.   ECOLOGY

Cropping practices manipulate abundance patterns of root and soil microbiome members paving the way to smart farming

(2018) Kyle Hartman et al.   Microbiome

Structure and function of the global topsoil microbiome

(2018) Mohammad Bahram et al.   NATURE

QMEC: a tool for high-throughput quantitative assessment of microbial functional potential in C, N, P, and S biogeochemical cycling

(2018) Bangxiao Zheng et al.   Science China-Life Sciences

Biodiversity across trophic levels drives multifunctionality in highly diverse forests

(2018) Andreas Schuldt et al.   Nature Communications

Protists: Puppet Masters of the Rhizosphere Microbiome

(2018) Zhilei Gao et al.   TRENDS IN PLANT SCIENCE

35 years of manure and chemical fertilizer application alters soil microbial community composition in a Fluvo-aquic soil in Northern China

(2017) Meng Wei et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Microbial richness and composition independently drive soil multifunctionality

(2017) Manuel Delgado-Baquerizo et al.   FUNCTIONAL ECOLOGY

Soil protist communities form a dynamic hub in the soil microbiome

(2017) Wu Xiong et al.   ISME Journal

Unraveling the active microbial populations involved in nitrogen utilization in a vertical subsurface flow constructed wetland treating urban wastewater

(2017) Catiane Pelissari et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Three years of biochar amendment alters soil physiochemical properties and fungal community composition in a black soil of northeast China

(2017) Qin Yao et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil networks become more connected and take up more carbon as nature restoration progresses

(2017) Elly Morriën et al.   Nature Communications

Microbial communities of an arable soil treated for 8 years with organic and inorganic fertilizers

(2016) Chen Chen et al.   BIOLOGY AND FERTILITY OF SOILS

Long-Term Effects of Multiwalled Carbon Nanotubes and Graphene on Microbial Communities in Dry Soil

(2016) Yuan Ge et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

(2016) Nhu H. Nguyen et al.   Fungal Ecology

Bridging ecology and conservation: from ecological networks to ecosystem function

(2016) Eric Harvey et al.   JOURNAL OF APPLIED ECOLOGY

The active microbial diversity drives ecosystem multifunctionality and is physiologically related to carbon availability in Mediterranean semi-arid soils

(2016) Felipe Bastida et al.   MOLECULAR ECOLOGY

Biodiversity at multiple trophic levels is needed for ecosystem multifunctionality

(2016) Santiago Soliveres et al.   NATURE

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Decoupling function and taxonomy in the global ocean microbiome

(2016) S. Louca et al.   SCIENCE

Insight into how organic amendments can shape the soil microbiome in long-term field experiments as revealed by network analysis

(2016) Ning Ling et al.   SOIL BIOLOGY & BIOCHEMISTRY

An Underground Revolution: Biodiversity and Soil Ecological Engineering for Agricultural Sustainability

(2016) S. Franz Bender et al.   TRENDS IN ECOLOGY & EVOLUTION

Microbial diversity drives multifunctionality in terrestrial ecosystems

(2016) Manuel Delgado-Baquerizo et al.   Nature Communications

Nitrososphaera viennensis gen. nov., sp. nov., an aerobic and mesophilic, ammonia-oxidizing archaeon from soil and a member of the archaeal phylum Thaumarchaeota

(2014) M. Stieglmeier et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Effects of long-term differential fertilization on eukaryotic microbial communities in an arable soil: a multiple barcoding approach

(2014) Guillaume Lentendu et al.   MOLECULAR ECOLOGY

Belowground biodiversity and ecosystem functioning

(2014) Richard D. Bardgett et al.   NATURE

Discontinuity in the responses of ecosystem processes and multifunctionality to altered soil community composition

(2014) Mark A. Bradford et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Soil fertility is associated with fungal and bacterial richness, whereas pH is associated with community composition in polar soil microbial communities

(2014) Steven D. Siciliano et al.   SOIL BIOLOGY & BIOCHEMISTRY

Tropical agricultural land management influences on soil microbial communities through its effect on soil organic carbon

(2013) Woo Jun Sul et al.   SOIL BIOLOGY & BIOCHEMISTRY

Investigating the relationship between biodiversity and ecosystem multifunctionality: challenges and solutions

(2013) Jarrett E. K. Byrnes et al.   Methods in Ecology and Evolution

Functional and ecological consequences of saprotrophic fungus–grazer interactions

(2012) Thomas W Crowther et al.   ISME Journal

Evolution of Multicopper Oxidase Genes in Coprophilous and Non-Coprophilous Members of the Order Sordariales

(2011) Stefanie Poggeler   CURRENT GENOMICS

Outcomes of fungal interactions are determined by soil invertebrate grazers

(2011) Thomas W. Crowther et al.   ECOLOGY LETTERS

Fungal and bacterial growth responses to N fertilization and pH in the 150-year ‘Park Grass’ UK grassland experiment

(2011) Johannes Rousk et al.   FEMS MICROBIOLOGY ECOLOGY

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

Soil fauna alter the effects of litter composition on nitrogen cycling in a mineral soil

(2011) Yolima Carrillo et al.   SOIL BIOLOGY & BIOCHEMISTRY

Long-term effect of chemical fertilizer, straw, and manure on soil chemical and biological properties in northwest China

(2010) Enke Liu et al.   GEODERMA

Sustaining multiple ecosystem functions in grassland communities requires higher biodiversity

(2010) E. S. Zavaleta et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Significant Acidification in Major Chinese Croplands

(2010) J. H. Guo et al.   SCIENCE

Plant–microbe interactions promoting plant growth and health: perspectives for controlled use of microorganisms in agriculture

(2009) Gabriele Berg   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Adhaeribacter terreus sp. nov., isolated from forest soil

(2009) J.-Y. Zhang et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

The versatility and adaptation of bacteria from the genus Stenotrophomonas

(2009) Robert P. Ryan et al.   NATURE REVIEWS MICROBIOLOGY

Friends and foes: streptomycetes as modulators of plant disease and symbiosis

(2008) Silvia D. Schrey et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Antagonistic and synergistic effects of fungal and bacterial growth in soil after adding different carbon and nitrogen sources

(2008) Sandra Meidute et al.   SOIL BIOLOGY & BIOCHEMISTRY

Long-term organic farming fosters below and aboveground biota: Implications for soil quality, biological control and productivity

(2008) Klaus Birkhofer et al.   SOIL BIOLOGY & BIOCHEMISTRY