Can We Use Functional Annotation of Prokaryotic Taxa (FAPROTAX) to Assign the Ecological Functions of Soil Bacteria?

Joining Illumina paired-end reads for classifying phylogenetic marker sequences

(2020) Tsunglin Liu et al.   BMC BIOINFORMATICS

New Soil, Old Plants, and Ubiquitous Microbes: Evaluating the Potential of Incipient Basaltic Soil to Support Native Plant Growth and Influence Belowground Soil Microbial Community Composition

(2020) Aditi Sengupta et al.   Sustainability

Future Climate Significantly Alters Fungal Plant Pathogen Dynamics during the Early Phase of Wheat Litter Decomposition

(2020) Sara Fareed Mohamed Wahdan et al.   Microorganisms

Investigating the consequences of climate change under different land‐use regimes: a novel experimental infrastructure

(2019) Martin Schädler et al.   Ecosphere

Dynamic distribution of gallbladder microbiota in rabbit at different ages and health states

(2019) Yawei Xing et al.   PLoS One

Soil microbial character response to plant community variation after grazing prohibition for 10 years in a Qinghai-Tibetan alpine meadow

(2019) Yali Yin et al.   PLANT AND SOIL

Long-term stacking coal promoted soil bacterial richness associated with increased soil organic matter in coal yards of power plants

(2019) Congcong Shen et al.   JOURNAL OF SOILS AND SEDIMENTS

Potential pathogen communities in highly polluted river ecosystems: Geographical distribution and environmental influence

(2019) Yuzhan Yang et al.   AMBIO

Highly Diverse Aquatic Microbial Communities Separated by Permafrost in Greenland Show Distinct Features According to Environmental Niches

(2019) Malin Bomberg et al.   Frontiers in Microbiology

Comparison of soil bacterial community and functional characteristics following afforestation in the semi-arid areas

(2019) Jiaojiao Deng et al.   PeerJ

Variations in soil bacterial taxonomic profiles and putative functions in response to straw incorporation combined with N fertilization during the maize growing season

(2019) Hui Li et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Forest-to-agriculture conversion in Amazon drives soil microbial communities and N-cycle

(2019) Luis Fernando Merloti et al.   SOIL BIOLOGY & BIOCHEMISTRY

First Insights into the Microbiome of a Mangrove Tree Reveal Significant Differences in Taxonomic and Functional Composition among Plant and Soil Compartments

(2019) Witoon Purahong et al.   Microorganisms

Comprehensive skin microbiome analysis reveals the uniqueness of human skin and evidence for phylosymbiosis within the class Mammalia

(2018) Ashley A. Ross et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Environmental and Host Effects on Skin Bacterial Community Composition in Panamanian Frogs

(2018) Brandon J. Varela et al.   Frontiers in Microbiology

Rhizosphere microbiota assemblage associated with wild and cultivated soybeans grown in three types of soil suspensions

(2018) Chunling Chang et al.   Archives of Agronomy and Soil Science

Effect of tillage and static abiotic soil properties on microbial diversity

(2018) Fabienne Legrand et al.   APPLIED SOIL ECOLOGY

Prokaryotic footprints in urban water ecosystems: A case study of urban landscape ponds in a coastal city, China

(2018) Anyi Hu et al.   ENVIRONMENTAL POLLUTION

Contrasting Soil Bacterial Community, Diversity, and Function in Two Forests in China

(2018) Hua Wei et al.   Frontiers in Microbiology

Traits-Based Integration of Multi-Species Inoculants Facilitates Shifts of Indigenous Soil Bacterial Community

(2018) Jingjing Wang et al.   Frontiers in Microbiology

Abundant and Rare Microbial Biospheres Respond Differently to Environmental and Spatial Factors in Tibetan Hot Springs

(2018) Yanmin Zhang et al.   Frontiers in Microbiology

Spartina alterniflora invasion alters soil bacterial communities and enhances soil N2O emissions by stimulating soil denitrification in mangrove wetland

(2018) Gui-Feng Gao et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Nitrogen fixing potential of various heterotrophic Bacillus strains from a tropical estuary and adjacent coastal regions

(2017) Jesmi Yousuf et al.   JOURNAL OF BASIC MICROBIOLOGY

Potassium solubilizing bacteria (KSB):: Mechanisms, promotion of plant growth, and future prospects ­ A review

(2017) H. Etesami et al.   Journal of Soil Science and Plant Nutrition

Deciphering composition and function of the root microbiome of a legume plant

(2017) Kyle Hartman et al.   Microbiome

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

(2016) Nhu H. Nguyen et al.   Fungal Ecology

Decoupling function and taxonomy in the global ocean microbiome

(2016) S. Louca et al.   SCIENCE

Soil extracellular enzyme activities, soil carbon and nitrogen storage under nitrogen fertilization: A meta-analysis

(2016) Siyang Jian et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?

(2016) Emily B. Graham et al.   Frontiers in Microbiology

High taxonomic variability despite stable functional structure across microbial communities

(2016) Stilianos Louca et al.   Nature Ecology & Evolution

Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data: Fig. 1.

(2015) Kathrin P. Aßhauer et al.   BIOINFORMATICS

Microbial Communities Can Be Described by Metabolic Structure: A General Framework and Application to a Seasonally Variable, Depth-Stratified Microbial Community from the Coastal West Antarctic Peninsula

(2015) Jeff S. Bowman et al.   PLoS One

Microbial treatment of sulfur-contaminated industrial wastes

(2013) Marlenne Gómez-Ramírez et al.   JOURNAL OF ENVIRONMENTAL SCIENCE AND HEALTH PART A-TOXIC/HAZARDOUS SUBSTANCES & ENVIRONMENTAL ENGINEERING

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

Isolation and characterization of potassium solubilizing bacteria in some Iranian soils

(2013) Javad Keshavarz Zarjani et al.   Archives of Agronomy and Soil Science

Phosphate solubilizing microbes: sustainable approach for managing phosphorus deficiency in agricultural soils

(2013) Seema B Sharma et al.   SpringerPlus

A standardized method for the sampling of rhizosphere and rhizoplan soil bacteria associated to a herbaceous root system

(2012) Cindy D. C. Barillot et al.   ANNALS OF MICROBIOLOGY

Biodiversity and biotechnological potential of microorganisms from mangrove ecosystems: a review

(2012) Hrudayanath Thatoi et al.   ANNALS OF MICROBIOLOGY

Organic matter inputs shift soil enzyme activity and allocation patterns in a wet tropical forest

(2012) Samantha R. Weintraub et al.   BIOGEOCHEMISTRY

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Microbial Links between Sulfate Reduction and Metal Retention in Uranium- and Heavy Metal-Contaminated Soil

(2010) J. Sitte et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Aerobic Mineralization of Hexachlorobenzene by Newly Isolated Pentachloronitrobenzene-Degrading Nocardioides sp. Strain PD653

(2009) K. Takagi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacterial Degradation of Aromatic Compounds

(2009) Jong-Su Seo et al.   International Journal of Environmental Research and Public Health