Deciphering Potential Roles of Earthworms in Mitigation of Antibiotic Resistance in the Soils from Diverse Ecosystems

Does reduced usage of antibiotics in livestock production mitigate the spread of antibiotic resistance in soil, earthworm guts, and the phyllosphere?

(2020) Shu-yi-dan Zhou et al.   ENVIRONMENT INTERNATIONAL

Effects of Earthworms on the Microbiomes and Antibiotic Resistomes of Detritus Fauna and Phyllospheres

(2020) Dong Zhu et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Mobile Incubator for Iron(III) Reduction in the Gut of the Soil-Feeding Earthworm Pheretima guillelmi and Interaction with Denitrification

(2019) Guo-Wei Zhou et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Effects of Arsenic on Gut Microbiota and Its Biotransformation Genes in Earthworm Metaphire sieboldi

(2019) Hong-Tao Wang et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Long-term application of organic fertilization causes the accumulation of antibiotic resistome in earthworm gut microbiota

(2019) Jing Ding et al.   ENVIRONMENT INTERNATIONAL

Metaphire guillelmi gut as hospitable micro-environment for the potential transmission of antibiotic resistance genes

(2019) Huizhen Chao et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Agriculture erases climate constraints on soil nematode communities across large spatial scales

(2019) Xianping Li et al.   GLOBAL CHANGE BIOLOGY

Balance between community assembly processes mediates species coexistence in agricultural soil microbiomes across eastern China

(2019) Shuo Jiao et al.   ISME Journal

Global distribution of earthworm diversity

(2019) Helen R. P. Phillips et al.   SCIENCE

Gut digestion of earthworms significantly attenuates cell-free and -associated antibiotic resistance genes in excess activated sludge by affecting bacterial profiles

(2019) Guangyu Cui et al.   SCIENCE OF THE TOTAL ENVIRONMENT

The fecal resistome of dairy cattle is associated with diet during nursing

(2019) Jinxin Liu et al.   Nature Communications

Host identity determines plant associated resistomes

(2019) Qing-Lin Chen et al.   ENVIRONMENTAL POLLUTION

Effects of earthworms on the fate of tetracycline and fluoroquinolone resistance genes of sewage sludge during vermicomposting

(2018) Kui Huang et al.   BIORESOURCE TECHNOLOGY

Diversity of herbaceous plants and bacterial communities regulates soil resistome across forest biomes

(2018) Hang-Wei Hu et al.   ENVIRONMENTAL MICROBIOLOGY

Antibiotics Disturb the Microbiome and Increase the Incidence of Resistance Genes in the Gut of a Common Soil Collembolan

(2018) Dong Zhu et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Microbial community assembly in wild populations of the fruit fly Drosophila melanogaster

(2018) Karen L. Adair et al.   ISME Journal

WHO Global Antimicrobial Resistance Surveillance System early implementation 2016–17

(2018) Barbara Tornimbene et al.   LANCET INFECTIOUS DISEASES

A global atlas of the dominant bacteria found in soil

(2018) Manuel Delgado-Baquerizo et al.   SCIENCE

Exposure of soil collembolans to microplastics perturbs their gut microbiota and alters their isotopic composition

(2018) Dong Zhu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Rapidly mitigating antibiotic resistant risks in chicken manure by Hermetia illucens bioconversion with intestinal microflora

(2018) Minmin Cai et al.   ENVIRONMENTAL MICROBIOLOGY

Land Use Influences Antibiotic Resistance in the Microbiome of Soil Collembolans Orchesellides sinensis

(2018) Dong Zhu et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Gut bacterial and fungal communities in ground-dwelling beetles are associated with host food habit and habitat

(2018) Rina Kudo et al.   ISME Journal

Antibiotic Resistance Mechanisms in Bacteria: Relationships Between Resistance Determinants of Antibiotic Producers, Environmental Bacteria, and Clinical Pathogens

(2018) Elizabeth Peterson et al.   Frontiers in Microbiology

Hyperthermophilic Composting Accelerates the Removal of Antibiotic Resistance Genes and Mobile Genetic Elements in Sewage Sludge

(2017) Hanpeng Liao et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Soil: Restore earthworms to rebuild topsoil

(2017) Robert Blakemore et al.   NATURE

Microbial mass movements

(2017) Yong-Guan Zhu et al.   SCIENCE

Metagenomics of urban sewage identifies an extensively shared antibiotic resistome in China

(2017) Jian-Qiang Su et al.   Microbiome

Mapping earthworm communities in Europe

(2016) Michiel Rutgers et al.   APPLIED SOIL ECOLOGY

Identifying the microbial taxa that consistently respond to soil warming across time and space

(2016) Angela M. Oliverio et al.   GLOBAL CHANGE BIOLOGY

The antibiotic resistome of swine manure is significantly altered by association with the Musca domestica larvae gut microbiome

(2016) Hang Wang et al.   ISME Journal

Assembly of the Caenorhabditis elegans gut microbiota from diverse soil microbial environments

(2016) Maureen Berg et al.   ISME Journal

Species-specific effects of earthworms on microbial communities and the fate of litter-derived carbon

(2016) Chih-Han Chang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Earthworm burrows: Kinetics and spatial distribution of enzymes of C-, N- and P- cycles

(2016) Duyen T.T. Hoang et al.   SOIL BIOLOGY & BIOCHEMISTRY

What to do about antimicrobial resistance

(2016) David L Heymann   BMJ-British Medical Journal

What to do about antimicrobial resistance

(2016) David L Heymann   BMJ-British Medical Journal

Methanogenic food web in the gut contents of methane-emitting earthworm Eudrilus eugeniae from Brazil

(2015) Kristin Schulz et al.   ISME Journal

Continental-scale distributions of dust-associated bacteria and fungi

(2015) Albert Barberán et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Soil biodiversity and DNA barcodes: opportunities and challenges

(2015) Alberto Orgiazzi et al.   SOIL BIOLOGY & BIOCHEMISTRY

The soil resistome: a critical review on antibiotic resistance origins, ecology and dissemination potential in telluric bacteria

(2014) Joseph Nesme et al.   ENVIRONMENTAL MICROBIOLOGY

The effect of anthropogenic arsenic contamination on the earthworm microbiome

(2014) Daniel Antony Pass et al.   ENVIRONMENTAL MICROBIOLOGY

What is a resistance gene? Ranking risk in resistomes

(2014) José L. Martínez et al.   NATURE REVIEWS MICROBIOLOGY

rrnDB: improved tools for interpreting rRNA gene abundance in bacteria and archaea and a new foundation for future development

(2014) Steven F. Stoddard et al.   NUCLEIC ACIDS RESEARCH

Utilization of earthworms and termites for the restoration of ecosystem functioning

(2013) Pascal Jouquet et al.   APPLIED SOIL ECOLOGY

A review of earthworm impact on soil function and ecosystem services

(2013) M. Blouin et al.   EUROPEAN JOURNAL OF SOIL SCIENCE

Diverse and abundant antibiotic resistance genes in Chinese swine farms

(2013) Yong-Guan Zhu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Exotic earthworms alter soil microbial community composition and function

(2013) Mark A. Dempsey et al.   SOIL BIOLOGY & BIOCHEMISTRY

The Shared Antibiotic Resistome of Soil Bacteria and Human Pathogens

(2012) K. J. Forsberg et al.   SCIENCE

Natural Transformation Facilitates Transfer of Transposons, Integrons and Gene Cassettes between Bacterial Species

(2012) Sara Domingues et al.   PLoS Pathogens

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Antibiotic resistance in the environment: a link to the clinic?

(2010) Gerard D Wright   CURRENT OPINION IN MICROBIOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Quantifying the responses of macroinvertebrate assemblages to simulated stress: are more accurate similarity indices less useful?

(2010) Yong Cao et al.   Methods in Ecology and Evolution

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

A critical review of current methods in earthworm ecology: From individuals to populations

(2009) Mark D. Bartlett et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Gut wall bacteria of earthworms: a natural selection process

(2009) Dwipendra Thakuria et al.   ISME Journal