Insights into the roles of fungi and protist in the giant panda gut microbiome and antibiotic resistome

Metagenomic analysis revealed a wide distribution of antibiotic resistance genes and biosynthesis of antibiotics in the gut of giant pandas

(2021) Ghulam Raza Mustafa et al.   BMC MICROBIOLOGY

Fertilization alters protistan consumers and parasites in crop‐associated microbiomes

(2021) Anqi Sun et al.   ENVIRONMENTAL MICROBIOLOGY

Blastocystis Colonization Alters the Gut Microbiome and, in Some Cases, Promotes Faster Recovery From Induced Colitis

(2021) Vincent Billy et al.   Frontiers in Microbiology

Environmental DNA reveals seasonal shifts and potential interactions in a marine community

(2020) Anni Djurhuus et al.   Nature Communications

Effects of Earthworms on the Microbiomes and Antibiotic Resistomes of Detritus Fauna and Phyllospheres

(2020) Dong Zhu et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Changes in the environmental microbiome in the Anthropocene

(2020) Yong‐Guan Zhu et al.   GLOBAL CHANGE BIOLOGY

The microbiome and resistome of chimpanzees, gorillas, and humans across host lifestyle and geography

(2020) Tayte P. Campbell et al.   ISME Journal

Ecology and genomics of Actinobacteria: new concepts for natural product discovery

(2020) Doris A. van Bergeijk et al.   NATURE REVIEWS MICROBIOLOGY

Complementary Metagenomic Approaches Improve Reconstruction of Microbial Diversity in a Forest Soil

(2020) L. V. Alteio et al.   mSystems

Division of functional roles for termite gut protists revealed by single-cell transcriptomes

(2020) Yuki Nishimura et al.   ISME Journal

Diet drives convergent evolution of gut microbiomes in bamboo-eating species

(2020) Guangping Huang et al.   Science China-Life Sciences

Antimicrobial resistance in enteric bacteria: current state and next-generation solutions

(2020) M. J. Wallace et al.   Gut Microbes

Dynamics of bacteriophages in gut of giant pandas reveal a potential regulation of dietary intake on bacteriophage composition

(2020) Min Guo et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Geographic pattern of antibiotic resistance genes in the metagenomes of the giant panda

(2020) Ting Hu et al.   Microbial Biotechnology

Man-made microbial resistances in built environments

(2019) Alexander Mahnert et al.   Nature Communications

Giant panda protection: challenges and hopes

(2019) Dongwei Kang et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Trophic Transfer of Antibiotic Resistance Genes in a Soil Detritus Food Chain

(2019) Dong Zhu et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Antibiotic resistance genes in the Actinobacteria phylum

(2019) Mehdi Fatahi-Bafghi   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

Host diet and evolutionary history explain different aspects of gut microbiome diversity among vertebrate clades

(2019) Nicholas D. Youngblut et al.   Nature Communications

Effects of diet on gut microbiota of soil collembolans

(2019) Qian Xiang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Soil biota, antimicrobial resistance and planetary health

(2019) Yong-Guan Zhu et al.   ENVIRONMENT INTERNATIONAL

Biodiversity of protists and nematodes in the wild nonhuman primate gut

(2019) Allison E. Mann et al.   ISME Journal

Human gut bacteria contain acquired interbacterial defence systems

(2019) Benjamin D. Ross et al.   NATURE

Viral Metagenomics Revealed Sendai Virus and Coronavirus Infection of Malayan Pangolins (Manis javanica)

(2019) Ping Liu et al.   Viruses-Basel

The fecal resistome of dairy cattle is associated with diet during nursing

(2019) Jinxin Liu et al.   Nature Communications

Comparative Study of Gut Microbiota in Wild and Captive Giant Pandas (Ailuropoda melanoleuca)

(2019) Wei Guo et al.   Genes

The endangered red panda ( Ailurus fulgens ): Ecology and conservation approaches across the entire range

(2018) Arjun Thapa et al.   BIOLOGICAL CONSERVATION

Age-associated microbiome shows the giant panda lives on hemicelluloses, not on cellulose

(2018) Wenping Zhang et al.   ISME Journal

Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes

(2018) Katherine R. Amato et al.   ISME Journal

Feed additives shift gut microbiota and enrich antibiotic resistance in swine gut

(2018) Yi Zhao et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Gut microbiomes of wild great apes fluctuate seasonally in response to diet

(2018) Allison L. Hicks et al.   Nature Communications

Characterization of Wild and Captive Baboon Gut Microbiota and Their Antibiotic Resistomes

(2018) Pablo Tsukayama et al.   mSystems

Asymptomatic Intestinal Colonization with Protist Blastocystis Is Strongly Associated with Distinct Microbiome Ecological Patterns

(2018) M. E. Nieves-Ramírez et al.   mSystems

Microbial Eukaryotes: a Missing Link in Gut Microbiome Studies

(2018) Isabelle Laforest-Lapointe et al.   mSystems

Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes

(2018) Sina M. Adl et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Structure and function of the global topsoil microbiome

(2018) Mohammad Bahram et al.   NATURE

Metagenomic Analysis of Bacteria, Fungi, Bacteriophages, and Helminths in the Gut of Giant Pandas

(2018) Shengzhi Yang et al.   Frontiers in Microbiology

Antibiotics, Resistome and Resistance Mechanisms: A Bacterial Perspective

(2018) Insha Sultan et al.   Frontiers in Microbiology

Antibiotic resistome in a large-scale healthy human gut microbiota deciphered by metagenomic and network analyses

(2017) Jie Feng et al.   ENVIRONMENTAL MICROBIOLOGY

Soil protist communities form a dynamic hub in the soil microbiome

(2017) Wu Xiong et al.   ISME Journal

China: Rail network must protect giant pandas

(2017) Shucai Li et al.   NATURE

Seasonal variation in nutrient utilization shapes gut microbiome structure and function in wild giant pandas

(2017) Qi Wu et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Continental-scale pollution of estuaries with antibiotic resistance genes

(2017) Yong-Guan Zhu et al.   Nature Microbiology

Fungal networks serve as novel ecological routes for enrichment and dissemination of antibiotic resistance genes as exhibited by microcosm experiments

(2017) Rashid Nazir et al.   Scientific Reports

Immunological Consequences of Intestinal Fungal Dysbiosis

(2016) Matthew L. Wheeler et al.   Cell Host & Microbe

Fungal microbiota dysbiosis in IBD

(2016) Harry Sokol et al.   GUT

Assembly of the Caenorhabditis elegans gut microbiota from diverse soil microbial environments

(2016) Maureen Berg et al.   ISME Journal

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Temporal changes in fungal communities associated with guts and appendages of Collembola as based on culturing and high-throughput sequencing

(2016) Sten Anslan et al.   SOIL BIOLOGY & BIOCHEMISTRY

Fecal microbial transplant for the treatment of pediatric inflammatory bowel disease

(2016) Alice Yuxin Wang et al.   WORLD JOURNAL OF GASTROENTEROLOGY

Divergence across diet, time and populations rules out parallel evolution in the gut microbiomes of Trinidadian guppies

(2015) Karen E Sullam et al.   ISME Journal

Transfer of antibiotic-resistance genes via phage-related mobile elements

(2015) Maryury Brown-Jaque et al.   PLASMID

The giant panda gut microbiome

(2015) Fuwen Wei et al.   TRENDS IN MICROBIOLOGY

Variation in Rural African Gut Microbiota Is Strongly Correlated with Colonization by Entamoeba and Subsistence

(2015) Elise R. Morton et al.   PLoS Genetics

Multiple micro-predators controlling bacterial communities in the environment

(2014) Julia Johnke et al.   CURRENT OPINION IN BIOTECHNOLOGY

Gut microbiota–generated metabolites in animal health and disease

(2014) Won-Jae Lee et al.   Nature Chemical Biology

Biogeographic patterns in below-ground diversity in New York City's Central Park are similar to those observed globally

(2014) K. S. Ramirez et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Antibiotic resistance—the need for global solutions

(2013) Ramanan Laxminarayan et al.   LANCET INFECTIOUS DISEASES

The intestinal microbiota in health and disease

(2011) Vincent B. Young   CURRENT OPINION IN GASTROENTEROLOGY

Antibiotic resistance is ancient

(2011) Vanessa M. D’Costa et al.   NATURE

On the origin of antibiotics and mycotoxins

(2011) W. Thomas Shier   Toxin Reviews

Call of the wild: antibiotic resistance genes in natural environments

(2010) Heather K. Allen et al.   NATURE REVIEWS MICROBIOLOGY