Diversity and co-occurrence network modularization of bacterial communities determine soil fertility and crop yields in arid fertigation agroecosystems

Legacy effects of 8-year nitrogen inputs on bacterial assemblage in wheat rhizosphere

(2020) Wenbo Liu et al.   BIOLOGY AND FERTILITY OF SOILS

Distinct mechanisms shape soil bacterial and fungal co-occurrence networks in a mountain ecosystem

(2020) Jiabao Li et al.   FEMS MICROBIOLOGY ECOLOGY

Flooding Irrigation Weakens the Molecular Ecological Network Complexity of Soil Microbes during the Process of Dryland-to-Paddy Conversion

(2020) Xiaoxiao Li et al.   International Journal of Environmental Research and Public Health

Soil depth and grassland origin cooperatively shape microbial community co‐occurrence and function

(2020) Racheal N. Upton et al.   Ecosphere

Divergent patterns of microbial community composition shift under two fertilization regimes revealed by responding species

(2020) Tongyan Yao et al.   APPLIED SOIL ECOLOGY

Biodiversity of key-stone phylotypes determines crop production in a 4-decade fertilization experiment

(2020) Kunkun Fan et al.   ISME Journal

Response of ammonia oxidation activities to water-level fluctuations in riparian zones in a column experiment

(2020) Siling Li et al.   CHEMOSPHERE

Highly connected taxa located in the microbial network are prevalent in the rhizosphere soil of healthy plant

(2019) Xinqi Huang et al.   BIOLOGY AND FERTILITY OF SOILS

Impact of soil leachate on microbial biomass and diversity affected by plant diversity

(2019) Chao Zhang et al.   PLANT AND SOIL

Long-term organic fertilization improves the productivity of kiwifruit (Actinidia chinensis Planch.) through increasing rhizosphere microbial diversity and network complexity

(2019) Zhe Liu et al.   APPLIED SOIL ECOLOGY

Beyond microbial diversity for predicting soil functions: A mini review

(2019) Paolo NANNIPIERI et al.   PEDOSPHERE

Soil fertility and crop production are fostered by micro-nano bubble irrigation with associated changes in soil bacterial community

(2019) Yunpeng Zhou et al.   SOIL BIOLOGY & BIOCHEMISTRY

Linking soil bacterial and fungal communities to vegetation succession following agricultural abandonment

(2018) Kerong Zhang et al.   PLANT AND SOIL

Interactions of soil bacteria and fungi with plants during long-term grazing exclusion in semiarid grasslands

(2018) Chao Zhang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Ecoenzymatic stoichiometry and microbial nutrient limitation in rhizosphere soil in the arid area of the northern Loess Plateau, China

(2018) Yongxing Cui et al.   SOIL BIOLOGY & BIOCHEMISTRY

Long-term fertilization influences community assembly processes of soil diazotrophs

(2018) Maomao Feng et al.   SOIL BIOLOGY & BIOCHEMISTRY

Effect of LSU and ITS genetic markers and reference databases on analyses of fungal communities

(2018) Chao Xue et al.   BIOLOGY AND FERTILITY OF SOILS

pH is the primary determinant of the bacterial community structure in agricultural soils impacted by polycyclic aromatic hydrocarbon pollution

(2017) Yucheng Wu et al.   Scientific Reports

Nitrogen fertilization directly affects soil bacterial diversity and indirectly affects bacterial community composition

(2016) Jun Zeng et al.   SOIL BIOLOGY & BIOCHEMISTRY

Co-acclimation of bacterial communities under stresses of hydrocarbons with different structures

(2016) Hui Wang et al.   Scientific Reports

Network succession reveals the importance of competition in response to emulsified vegetable oil amendment for uranium bioremediation

(2015) Ye Deng et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterioplankton community resilience to ocean acidification: evidence from microbial network analysis

(2015) Yu Wang et al.   ICES JOURNAL OF MARINE SCIENCE

A Dissolved Oxygen Threshold for Shifts in Bacterial Community Structure in a Seasonally Hypoxic Estuary

(2015) Rachel L. Spietz et al.   PLoS One

Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi

(2015) Leho Tedersoo et al.   MycoKeys

Halotolerant PGPRs Prevent Major Shifts in Indigenous Microbial Community Structure Under Salinity Stress

(2014) Nidhi Bharti et al.   MICROBIAL ECOLOGY

Belowground biodiversity and ecosystem functioning

(2014) Richard D. Bardgett et al.   NATURE

Going back to the roots: the microbial ecology of the rhizosphere

(2013) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

Molecular ecological network analyses

(2012) Ye Deng et al.   BMC BIOINFORMATICS

Who is who in litter decomposition? Metaproteomics reveals major microbial players and their biogeochemical functions

(2012) Thomas Schneider et al.   ISME Journal

Potential impact of process parameters upon the bacterial diversity in the mesophilic anaerobic digestion of beet silage

(2011) Niclas Krakat et al.   BIORESOURCE TECHNOLOGY

Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients

(2011) Noah Fierer et al.   ISME Journal

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

Nitrogen loading levels affect abundance and composition of soil ammonia oxidizing prokaryotes in semiarid temperate grassland

(2011) Xin-Yi Shen et al.   JOURNAL OF SOILS AND SEDIMENTS

Change in gene abundance in the nitrogen biogeochemical cycle with temperature and nitrogen addition in Antarctic soils

(2011) Jaejoon Jung et al.   RESEARCH IN MICROBIOLOGY

Quantification of Nitrogen Reductase and Nitrite Reductase Genes in Soil of Thinned and Clear-Cut Douglas-Fir Stands by Using Real-Time PCR

(2010) D. J. Levy-Booth et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Initial soil responses to experimental warming in two contrasting forest ecosystems, Eastern Tibetan Plateau, China: Nutrient availabilities, microbial properties and enzyme activities

(2010) Zhen-feng Xu et al.   APPLIED SOIL ECOLOGY

Soil organic matter quality as a link between microbial community structure and vegetation composition along a successional gradient in a boreal forest

(2010) Päivi Merilä et al.   APPLIED SOIL ECOLOGY

Nitrifiers and denitrifiers respond rapidly to changed moisture and increasing temperature in a pristine forest soil

(2010) Ute Szukics et al.   FEMS MICROBIOLOGY ECOLOGY

A global network of coexisting microbes from environmental and whole-genome sequence data

(2010) S. Chaffron et al.   GENOME RESEARCH

A class-wide phylogenetic assessment of Dothideomycetes

(2010) C.L. Schoch et al.   STUDIES IN MYCOLOGY

Linking soil bacterial diversity to ecosystem multifunctionality using backward-elimination boosted trees analysis

(2009) Ji-Zheng He et al.   JOURNAL OF SOILS AND SEDIMENTS

Initial community evenness favours functionality under selective stress

(2009) Lieven Wittebolle et al.   NATURE

Acquisition of phosphorus and nitrogen in the rhizosphere and plant growth promotion by microorganisms

(2009) Alan E. Richardson et al.   PLANT AND SOIL

The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems

(2008) Marcel G. A. van der Heijden et al.   ECOLOGY LETTERS

High Diversity of Diazotrophs in the Forefield of a Receding Alpine Glacier

(2008) Laurence Duc et al.   MICROBIAL ECOLOGY