The active microbial diversity drives ecosystem multifunctionality and is physiologically related to carbon availability in Mediterranean semi-arid soils

The ecological and physiological responses of the microbial community from a semiarid soil to hydrocarbon contamination and its bioremediation using compost amendment

(2016) F. Bastida et al.   Journal of Proteomics

Microbial diversity drives multifunctionality in terrestrial ecosystems

(2016) Manuel Delgado-Baquerizo et al.   Nature Communications

Deforestation fosters bacterial diversity and the cyanobacterial community responsible for carbon fixation processes under semiarid climate: a metaproteomics study

(2015) Felipe Bastida et al.   APPLIED SOIL ECOLOGY

Microbial activity in forest soil reflects the changes in ecosystem properties between summer and winter

(2015) Lucia Žifčáková et al.   ENVIRONMENTAL MICROBIOLOGY

Consistent responses of soil microbial communities to elevated nutrient inputs in grasslands across the globe

(2015) Jonathan W. Leff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Unipept metaproteomics analysis pipeline

(2015) Bart Mesuere et al.   PROTEOMICS

Water-extractable organic matter linked to soil physico-chemistry and microbiology at the regional scale

(2015) J. Guigue et al.   SOIL BIOLOGY & BIOCHEMISTRY

Shifts in microbial diversity through land use intensity as drivers of carbon mineralization in soil

(2015) Vincent Tardy et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil carbon content drives the biogeographical distribution of fungal communities in the black soil zone of northeast China

(2015) Junjie Liu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Biodiversity enhances ecosystem multifunctionality across trophic levels and habitats

(2015) Jonathan S. Lefcheck et al.   Nature Communications

Soil restoration with organic amendments: linking cellular functionality and ecosystem processes

(2015) F. Bastida et al.   Scientific Reports

Linking variability in soil solution dissolved organic carbon to climate, soil type, and vegetation type

(2014) Marta Camino-Serrano et al.   GLOBAL BIOGEOCHEMICAL CYCLES

Metaproteomics of soils from semiarid environment: Functional and phylogenetic information obtained with different protein extraction methods

(2014) F. Bastida et al.   Journal of Proteomics

Soil biodiversity and soil community composition determine ecosystem multifunctionality

(2014) C. Wagg et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Discontinuity in the responses of ecosystem processes and multifunctionality to altered soil community composition

(2014) Mark A. Bradford et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metaproteomics: Harnessing the Power of High Performance Mass Spectrometry to Identify the Suite of Proteins That Control Metabolic Activities in Microbial Communities

(2013) Robert L. Hettich et al.   ANALYTICAL CHEMISTRY

Cell Size Distributions of Soil Bacterial and Archaeal Taxa

(2013) Maria C. Portillo et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Phylogenetic and functional changes in the microbial community of long-term restored soils under semiarid climate

(2013) Felipe Bastida et al.   SOIL BIOLOGY & BIOCHEMISTRY

Active microorganisms in soil: Critical review of estimation criteria and approaches

(2013) Evgenia Blagodatskaya et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial modulators of soil carbon storage: integrating genomic and metabolic knowledge for global prediction

(2013) Pankaj Trivedi et al.   TRENDS IN MICROBIOLOGY

Abiotic drivers and plant traits explain landscape-scale patterns in soil microbial communities

(2012) Franciska T. de Vries et al.   ECOLOGY LETTERS

New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities

(2012) Katarina Ihrmark et al.   FEMS MICROBIOLOGY ECOLOGY

Who is who in litter decomposition? Metaproteomics reveals major microbial players and their biogeochemical functions

(2012) Thomas Schneider et al.   ISME Journal

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Fungal community on decomposing leaf litter undergoes rapid successional changes

(2012) Jana Voříšková et al.   ISME Journal

The Proteomics Identifications (PRIDE) database and associated tools: status in 2013

(2012) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

Soil metaproteomics – Comparative evaluation of protein extraction protocols

(2012) Katharina M. Keiblinger et al.   SOIL BIOLOGY & BIOCHEMISTRY

Comparison of 16S rRNA and protein-coding genes as molecular markers for assessing microbial diversity (Bacteria and Archaea) in ecosystems

(2011) Simon Roux et al.   FEMS MICROBIOLOGY ECOLOGY

Active and total microbial communities in forest soil are largely different and highly stratified during decomposition

(2011) Petr Baldrian et al.   ISME Journal

Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice

(2011) Claudia Knief et al.   ISME Journal

Structure and function of the symbiosis partners of the lung lichen (Lobaria pulmonaria L. Hoffm.) analyzed by metaproteomics

(2011) Thomas Schneider et al.   PROTEOMICS

Differential Growth Responses of Soil Bacterial Taxa to Carbon Substrates of Varying Chemical Recalcitrance

(2011) Katherine C. Goldfarb et al.   Frontiers in Microbiology

Direct Cellular Lysis/Protein Extraction Protocol for Soil Metaproteomics

(2010) Karuna Chourey et al.   JOURNAL OF PROTEOME RESEARCH

Resource limitation is a driver of local adaptation in mycorrhizal symbioses

(2010) N. C. Johnson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Shifts in bacterial community structure associated with inputs of low molecular weight carbon compounds to soil

(2010) Kathryn G. Eilers et al.   SOIL BIOLOGY & BIOCHEMISTRY

Biochemical properties and biodegradation of dissolved organic matter from soils

(2009) Susan R. Bowen et al.   BIOLOGY AND FERTILITY OF SOILS

IS THE GROWTH RATE HYPOTHESIS APPLICABLE TO MICROALGAE?1

(2009) Kevin J. Flynn et al.   JOURNAL OF PHYCOLOGY

Functional analysis of natural microbial consortia using community proteomics

(2009) Nathan C. VerBerkmoes et al.   NATURE REVIEWS MICROBIOLOGY

Community proteogenomics reveals insights into the physiology of phyllosphere bacteria

(2009) N. Delmotte et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The genomic basis of trophic strategy in marine bacteria

(2009) F. M. Lauro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Starving the soil of plant inputs for 50 years reduces abundance but not diversity of soil bacterial communities

(2009) Penny R. Hirsch et al.   SOIL BIOLOGY & BIOCHEMISTRY

A comparative study of dissolved organic carbon transport and stabilization in California forest and grassland soils

(2008) Jonathan Sanderman et al.   BIOGEOCHEMISTRY

Enzyme activities and microbial biomass in topsoil layer during spontaneous succession in spoil heaps after brown coal mining

(2008) Petr Baldrian et al.   SOIL BIOLOGY & BIOCHEMISTRY