Ecological stability of microbial communities in Lake Donghu regulated by keystone taxa

Environmental stress destabilizes microbial networks

(2021) Damian J. Hernandez et al.   ISME Journal

Erosion reduces soil microbial diversity, network complexity and multifunctionality

(2021) Liping Qiu et al.   ISME Journal

Mechanisms of niche‐neutrality balancing can drive the assembling of microbial community

(2021) Lixiao Wang et al.   MOLECULAR ECOLOGY

Climate warming enhances microbial network complexity and stability

(2021) Mengting Maggie Yuan et al.   Nature Climate Change

The effects of flood pulse on multiple aquatic organisms in a seasonal shallow lake

(2021) Yang Liu et al.   AQUATIC ECOLOGY

Microbial drivers of methane emissions from unrestored industrial salt ponds

(2021) Jinglie Zhou et al.   ISME Journal

Synergistic effects of antimony and arsenic contaminations on bacterial, archaeal and fungal communities in the rhizosphere of Miscanthus sinensis: Insights for nitrification and carbon mineralization

(2021) Huang Yu et al.   JOURNAL OF HAZARDOUS MATERIALS

Microbial community and abiotic effects on aquatic bacterial communities in north temperate lakes

(2021) Javad Sadeghi et al.   SCIENCE OF THE TOTAL ENVIRONMENT

The ecology of the plastisphere: Microbial composition, function, assembly, and network in the freshwater and seawater ecosystems

(2021) Changchao Li et al.   WATER RESEARCH

Stoichiometric and physiological mechanisms that link hub traits of submerged macrophytes with ecosystem structure and functioning

(2021) Qingyang Rao et al.   WATER RESEARCH

Low shifts in salinity determined assembly processes and network stability of microeukaryotic plankton communities in a subtropical urban reservoir

(2021) Yuanyuan Mo et al.   Microbiome

Environmental effects of nanoparticles on the ecological succession of gut microbiota across zebrafish development

(2021) Pubo Chen et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Pollution alters methanogenic and methanotrophic communities and increases dissolved methane in small ponds

(2021) Binhao Wang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Co-symbiosis of arbuscular mycorrhizal fungi (AMF) and diazotrophs promote biological nitrogen fixation in mangrove ecosystems

(2021) Huang Yu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Successional dynamics and alternative stable states in a saline activated sludge microbial community over 9 years

(2021) Yulin Wang et al.   Microbiome

Spatiotemporal dynamics of the archaeal community in coastal sediments: assembly process and co-occurrence relationship

(2020) Jiwen Liu et al.   ISME Journal

The balance of interaction types determines the assembly and stability of ecological communities

(2020) Jimmy J. Qian et al.   Nature Ecology & Evolution

Keystone taxa of water microbiome respond to environmental quality and predict water contamination

(2020) Binhao Wang et al.   ENVIRONMENTAL RESEARCH

A large-scale assessment of lakes reveals a pervasive signal of land use on bacterial communities

(2020) S. A. Kraemer et al.   ISME Journal

The seasonal variation of microbial communities in drinking water sources in Shanghai

(2020) Jun Guo et al.   JOURNAL OF CLEANER PRODUCTION

Removal of malodorant skatole by two enriched microbial consortia: Performance, dynamic, function prediction and bacteria isolation

(2020) Qiao Ma et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Earth microbial co-occurrence network reveals interconnection pattern across microbiomes

(2020) Bin Ma et al.   Microbiome

Modularity and predicted functions of the global sponge-microbiome network

(2019) Miguel Lurgi et al.   Nature Communications

Coordinated Metacommunity Assembly and Spatial Distribution of Multiple Microbial Kingdoms within a Lake

(2019) So-Yeon Jeong et al.   MICROBIAL ECOLOGY

Taxonomy and functional interactions in upper and bottom waters of an oligotrophic high-mountain deep lake (Redon, Pyrenees) unveiled by microbial metagenomics

(2019) Tomas Llorens-Marès et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Biogeographic patterns of microbial association networks in paddy soil within Eastern China

(2019) Xiaoling Wan et al.   SOIL BIOLOGY & BIOCHEMISTRY

Keystone taxa predict compositional change in microbial communities

(2018) Cristina M. Herren et al.   ENVIRONMENTAL MICROBIOLOGY

Distinct patterns and processes of abundant and rare eukaryotic plankton communities following a reservoir cyanobacterial bloom

(2018) Yuanyuan Xue et al.   ISME Journal

Keystone taxa as drivers of microbiome structure and functioning

(2018) Samiran Banerjee et al.   NATURE REVIEWS MICROBIOLOGY

Soil bacterial networks are less stable under drought than fungal networks

(2018) Franciska T. de Vries et al.   Nature Communications

Consistent responses of soil microbial taxonomic and functional attributes to mercury pollution across China

(2018) Yu-Rong Liu et al.   Microbiome

Response of Soil Microbial Communities to Elevated Antimony and Arsenic Contamination Indicates the Relationship between the Innate Microbiota and Contaminant Fractions

(2017) Weimin Sun et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Cohesion: a method for quantifying the connectivity of microbial communities

(2017) Cristina M Herren et al.   ISME Journal

Ecological Patterns Among Bacteria and Microbial Eukaryotes Derived from Network Analyses in a Low-Salinity Lake

(2017) Adriane Clark Jones et al.   MICROBIAL ECOLOGY

Nearly a decade-long repeatable seasonal diversity patterns of bacterioplankton communities in the eutrophic Lake Donghu (Wuhan, China)

(2017) Qingyun Yan et al.   MOLECULAR ECOLOGY

The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages

(2016) Shengjing Shi et al.   ECOLOGY LETTERS

Linking species functional roles to their network roles

(2016) Camille Coux et al.   ECOLOGY LETTERS

Ecology and physiology of anaerobic ammonium oxidizing bacteria

(2016) Mamoru Oshiki et al.   ENVIRONMENTAL MICROBIOLOGY

Geographic patterns of co-occurrence network topological features for soil microbiota at continental scale in eastern China

(2016) Bin Ma et al.   ISME Journal

Plankton networks driving carbon export in the oligotrophic ocean

(2016) Lionel Guidi et al.   NATURE

Decoupling function and taxonomy in the global ocean microbiome

(2016) S. Louca et al.   SCIENCE

Network analysis reveals seasonal variation of co-occurrence correlations between Cyanobacteria and other bacterioplankton

(2016) Dayong Zhao et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Determinants of bacterial communities in Canadian agroforestry systems

(2015) Samiran Banerjee et al.   ENVIRONMENTAL MICROBIOLOGY

Cross-depth analysis of marine bacterial networks suggests downward propagation of temporal changes

(2015) Jacob A Cram et al.   ISME Journal

The ecology of the microbiome: Networks, competition, and stability

(2015) K. Z. Coyte et al.   SCIENCE

Why are some microbes more ubiquitous than others? Predicting the habitat breadth of soil bacteria

(2014) Albert Barberán et al.   ECOLOGY LETTERS

Predictive modeling of groundwater nitrate pollution using Random Forest and multisource variables related to intrinsic and specific vulnerability: A case study in an agricultural setting (Southern Spain)

(2014) Victor Rodriguez-Galiano et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Deciphering microbial interactions and detecting keystone species with co-occurrence networks

(2014) David Berry et al.   Frontiers in Microbiology

Molecular ecological network analyses

(2012) Ye Deng et al.   BMC BIOINFORMATICS

Extending the concept of keystone species to communities and ecosystems

(2012) Nicolas Mouquet et al.   ECOLOGY LETTERS

Plankton dynamics under different climatic conditions in space and time

(2012) LISETTE N. DE SENERPONT DOMIS et al.   FRESHWATER BIOLOGY

A decade of seasonal dynamics and co-occurrences within freshwater bacterioplankton communities from eutrophic Lake Mendota, WI, USA

(2012) Emily L Kara et al.   ISME Journal

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

Diversity of Interaction Types and Ecological Community Stability

(2012) A. Mougi et al.   SCIENCE

Marine bacterial, archaeal and protistan association networks reveal ecological linkages

(2011) Joshua A Steele et al.   ISME Journal

Bacterial community assembly based on functional genes rather than species

(2011) C. Burke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogenetic Molecular Ecological Network of Soil Microbial Communities in Response to Elevated CO2

(2011) J. Zhou et al.   mBio

Stability of Ecological Communities and the Architecture of Mutualistic and Trophic Networks

(2010) E. Thebault et al.   SCIENCE

Phenology of high-elevation pelagic bacteria: the roles of meteorologic variability, catchment inputs and thermal stratification in structuring communities

(2008) Craig E Nelson   ISME Journal