Low shifts in salinity determined assembly processes and network stability of microeukaryotic plankton communities in a subtropical urban reservoir

Responses of abundant and rare bacterioplankton to temporal change in a subtropical urban reservoir

(2021) Pascaline Nyirabuhoro et al.   FEMS MICROBIOLOGY ECOLOGY

Fungal community assembly in drought-stressed sorghum shows stochasticity, selection, and universal ecological dynamics

(2020) Cheng Gao et al.   Nature Communications

Disentangling the mechanisms shaping the surface ocean microbiota

(2020) Ramiro Logares et al.   Microbiome

Particulate organic matter as causative factor to eutrophication of subtropical deep freshwater: Role of typhoon (tropical cyclone) in the nutrient cycling

(2020) Xiaofei Gao et al.   WATER RESEARCH

Core Microbiota in Agricultural Soils and Their Potential Associations with Nutrient Cycling

(2019) Shuo Jiao et al.   mSystems

Salinity Is a Key Determinant for Soil Microbial Communities in a Desert Ecosystem

(2019) Kaoping Zhang et al.   mSystems

Decoupling the Dynamics of Bacterial Taxonomy and Antibiotic Resistance Function in a Subtropical Urban Reservoir as Revealed by High-Frequency Sampling

(2019) Peiju Fang et al.   Frontiers in Microbiology

Protist diversity and community assembly in surface sediments of the South China Sea

(2019) Wenxue Wu et al.   MicrobiologyOpen

Salinity reduces bacterial diversity, but increases network complexity in Tibetan Plateau lakes

(2019) Mukan Ji et al.   FEMS MICROBIOLOGY ECOLOGY

Balance between community assembly processes mediates species coexistence in agricultural soil microbiomes across eastern China

(2019) Shuo Jiao et al.   ISME Journal

Stochastic processes shape microeukaryotic community assembly in a subtropical river across wet and dry seasons

(2019) Weidong Chen et al.   Microbiome

Updating the 97% identity threshold for 16S ribosomal RNA OTUs

(2018) Robert C Edgar   BIOINFORMATICS

Soil pH mediates the balance between stochastic and deterministic assembly of bacteria

(2018) Binu M. Tripathi et al.   ISME Journal

Short-term dynamics and interactions of marine protist communities during the spring–summer transition

(2018) Lyria Berdjeb et al.   ISME Journal

Keystone taxa as drivers of microbiome structure and functioning

(2018) Samiran Banerjee et al.   NATURE REVIEWS MICROBIOLOGY

Complexity and stability of ecological networks: a review of the theory

(2018) Pietro Landi et al.   POPULATION ECOLOGY

Freshwater salinization syndrome on a continental scale

(2018) Sujay S. Kaushal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes

(2018) Sina M. Adl et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Soil bacterial networks are less stable under drought than fungal networks

(2018) Franciska T. de Vries et al.   Nature Communications

Linking bacterial community composition to soil salinity along environmental gradients

(2018) Kristin M. Rath et al.   ISME Journal

Biodiversity increases and decreases ecosystem stability

(2018) Frank Pennekamp et al.   NATURE

Salt in freshwaters: causes, effects and prospects - introduction to the theme issue

(2018) Miguel Cañedo-Argüelles et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Impacts of road deicing salts on the early-life growth and development of a stream salmonid: Salt type matters

(2017) William D. Hintz et al.   ENVIRONMENTAL POLLUTION

Contrasting the relative importance of species sorting and dispersal limitation in shaping marine bacterial versus protist communities

(2017) Wenxue Wu et al.   ISME Journal

Stochastic Community Assembly: Does It Matter in Microbial Ecology?

(2017) Jizhong Zhou et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Salting our freshwater lakes

(2017) Hilary A. Dugan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Functional and Compositional Stability of Bacterial Metacommunities in Response to Salinity Changes

(2017) Mercè Berga et al.   Frontiers in Microbiology

The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages

(2016) Shengjing Shi et al.   ECOLOGY LETTERS

Multi-year assessment of coastal planktonic fungi reveals environmental drivers of diversity and abundance

(2016) Joe D Taylor et al.   ISME Journal

Plankton networks driving carbon export in the oligotrophic ocean

(2016) Lionel Guidi et al.   NATURE

Optimal network topology for structural robustness based on natural connectivity

(2016) Guan-sheng Peng et al.   PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS

Anthropogenic forcing dominates global mean sea-level rise since 1970

(2016) Aimée B. A. Slangen et al.   Nature Climate Change

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Phytoplankton Communities Exhibit a Stronger Response to Environmental Changes than Bacterioplankton in Three Subtropical Reservoirs

(2015) Lemian Liu et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Ecological impacts of global warming and water abstraction on lakes and reservoirs due to changes in water level and related changes in salinity

(2015) Erik Jeppesen et al.   HYDROBIOLOGIA

Core-satellite populations and seasonality of water meter biofilms in a metropolitan drinking water distribution system

(2015) Fangqiong Ling et al.   ISME Journal

Marked seasonality and high spatial variability of protist communities in shallow freshwater systems

(2015) Marianne Simon et al.   ISME Journal

The activated sludge ecosystem contains a core community of abundant organisms

(2015) Aaron M Saunders et al.   ISME Journal

Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession

(2015) Francisco Dini-Andreote et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The ecology of the microbiome: Networks, competition, and stability

(2015) K. Z. Coyte et al.   SCIENCE

Food-web stability signals critical transitions in temperate shallow lakes

(2015) Jan J. Kuiper et al.   Nature Communications

Using life history trade-offs to understand core-transient structuring of a small mammal community

(2015) Sarah R. Supp et al.   Ecosphere

Bacterial assembly and temporal dynamics in activated sludge of a full-scale municipal wastewater treatment plant

(2014) Feng Ju et al.   ISME Journal

Patterns and Processes of Microbial Community Assembly

(2013) D. R. Nemergut et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Patterns in the Composition of Microbial Communities from a Subtropical River: Effects of Environmental, Spatial and Temporal Factors

(2013) Lemian Liu et al.   PLoS One

The dissimilarity of species interaction networks

(2012) Timothée Poisot et al.   ECOLOGY LETTERS

Salinisation of rivers: An urgent ecological issue

(2012) Miguel Cañedo-Argüelles et al.   ENVIRONMENTAL POLLUTION

Biogeography of bacterial communities exposed to progressive long-term environmental change

(2012) Ramiro Logares et al.   ISME Journal

Bacterial diversity, community structure and potential growth rates along an estuarine salinity gradient

(2012) Barbara J Campbell et al.   ISME Journal

The Revised Classification of Eukaryotes

(2012) Sina M. Adl et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy

(2012) Laure Guillou et al.   NUCLEIC ACIDS RESEARCH

Inferring Correlation Networks from Genomic Survey Data

(2012) Jonathan Friedman et al.   PLoS Computational Biology

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Thermodynamic limits to microbial life at high salt concentrations

(2010) Aharon Oren   ENVIRONMENTAL MICROBIOLOGY

A Fresh Look at Road Salt: Aquatic Toxicity and Water-Quality Impacts on Local, Regional, and National Scales

(2010) Steven R. Corsi et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Partitioning core and satellite taxa from within cystic fibrosis lung bacterial communities

(2010) Christopher J van der Gast et al.   ISME Journal

Factors influencing zooplankton size structure at contrasting temperatures in coastal shallow lakes: Implications for effects of climate change

(2010) Sandra Brucet et al.   LIMNOLOGY AND OCEANOGRAPHY

Principal processes within the estuarine salinity gradient: A review

(2010) Irena V. Telesh et al.   MARINE POLLUTION BULLETIN

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Contrasts between habitat generalists and specialists: an empirical extension to the basic metacommunity framework

(2009) Shubha N. Pandit et al.   ECOLOGY

Regional invariance among microbial communities

(2009) Örjan Östman et al.   ECOLOGY LETTERS

A Method for Studying Protistan Diversity Using Massively Parallel Sequencing of V9 Hypervariable Regions of Small-Subunit Ribosomal RNA Genes

(2009) Linda A. Amaral-Zettler et al.   PLoS One

Circumpolar synchrony in big river bacterioplankton

(2009) Byron C. Crump et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA