Cohesion: a method for quantifying the connectivity of microbial communities

Correlation detection strategies in microbial data sets vary widely in sensitivity and precision

(2016) Sophie Weiss et al.   ISME Journal

Network analysis reveals functional redundancy and keystone taxa amongst bacterial and fungal communities during organic matter decomposition in an arable soil

(2016) Samiran Banerjee et al.   SOIL BIOLOGY & BIOCHEMISTRY

Toward a Predictive Understanding of Earth’s Microbiomes to Address 21st Century Challenges

(2016) Martin J. Blaser et al.   mBio

A new view of the tree of life

(2016) Laura A. Hug et al.   Nature Microbiology

Soil bacterial communities are shaped by temporal and environmental filtering: evidence from a long-term chronosequence

(2015) Zachary Freedman et al.   ENVIRONMENTAL MICROBIOLOGY

The ecology of the microbiome: Networks, competition, and stability

(2015) K. Z. Coyte et al.   SCIENCE

Many weak interactions and few strong; food-web feasibility depends on the combination of the strength of species’ interactions and their correct arrangement

(2015) K. L. Wootton et al.   Theoretical Ecology

Interaction strength revisited—clarifying the role of energy flux for food web stability

(2015) Karin A. Nilsson et al.   Theoretical Ecology

Proportionality: A Valid Alternative to Correlation for Relative Data

(2015) David Lovell et al.   PLoS Computational Biology

Ecology of bacteria in the human gastrointestinal tract—identification of keystone and foundation taxa

(2015) Pål Trosvik et al.   Microbiome

The Earth Microbiome project: successes and aspirations

(2014) Jack A Gilbert et al.   BMC BIOLOGY

The niche of an invasive marine microbe in a subtropical freshwater impoundment

(2014) K David Hambright et al.   ISME Journal

Seasonal and interannual variability of the marine bacterioplankton community throughout the water column over ten years

(2014) Jacob A Cram et al.   ISME Journal

Sequence Depth, Not PCR Replication, Improves Ecological Inference from Next Generation DNA Sequencing

(2014) Dylan P. Smith et al.   PLoS One

Identifying Keystone Species in the Human Gut Microbiome from Metagenomic Timeseries Using Sparse Linear Regression

(2014) Charles K. Fisher et al.   PLoS One

A meta-analysis of changes in bacterial and archaeal communities with time

(2013) Ashley Shade et al.   ISME Journal

Temporal variability and coherence of euphotic zone bacterial communities over a decade in the Southern California Bight

(2013) Cheryl-Emiliane T Chow et al.   ISME Journal

Nutrients and water temperature are significant predictors of cyanobacterial biomass in a 1147 lakes data set

(2013) Marieke Beaulieu et al.   LIMNOLOGY AND OCEANOGRAPHY

Small Genomes and Sparse Metabolisms of Sediment-Associated Bacteria from Four Candidate Phyla

(2013) R. S. Kantor et al.   mBio

A decade of seasonal dynamics and co-occurrences within freshwater bacterioplankton communities from eutrophic Lake Mendota, WI, USA

(2012) Emily L Kara et al.   ISME Journal

Tropical Soil Bacterial Communities in Malaysia: pH Dominates in the Equatorial Tropics Too

(2012) Binu M. Tripathi et al.   MICROBIAL ECOLOGY

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

A Global Pattern of Thermal Adaptation in Marine Phytoplankton

(2012) M. K. Thomas et al.   SCIENCE

Comprehensive Modelling of the Neurospora Circadian Clock and Its Temperature Compensation

(2012) Yu-Yao Tseng et al.   PLoS Computational Biology

Seeing the forest and the trees: multilevel models reveal both species and community patterns

(2012) Michelle M. Jackson et al.   Ecosphere

A Guide to the Natural History of Freshwater Lake Bacteria

(2011) R. J. Newton et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

The Human Gut Microbiome: Ecology and Recent Evolutionary Changes

(2010) Jens Walter et al.   Annual Review of Microbiology

Null model analysis of species associations using abundance data

(2010) Werner Ulrich et al.   ECOLOGY

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Seeing the Big Picture on Microbe Distribution

(2009) D. J. Patterson   SCIENCE

Trait-Based Community Ecology of Phytoplankton

(2008) Elena Litchman et al.   Annual Review of Ecology Evolution and Systematics

Complex food webs prevent competitive exclusion among producer species

(2008) U. Brose   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES