Modularity and predicted functions of the global sponge-microbiome network

Evolutionarily stable communities: a framework for understanding the role of trait evolution in the maintenance of diversity

(2018) Kyle F. Edwards et al.   ECOLOGY LETTERS

Evaluating the core microbiota in complex communities: A systematic investigation

(2017) Carmen Astudillo-García et al.   ENVIRONMENTAL MICROBIOLOGY

Multi-stability and the origin of microbial community types

(2017) Didier Gonze et al.   ISME Journal

Human embryos: Collect reliable data on embryo selection

(2017) Charis Thompson   NATURE

Redefining the sponge-symbiont acquisition paradigm: sponge microbes exhibit chemotaxis towards host-derived compounds

(2017) Jessica Tout et al.   Environmental Microbiology Reports

Coexistence of poribacterial phylotypes among geographically widespread and phylogenetically divergent sponge hosts

(2017) Georg Steinert et al.   Environmental Microbiology Reports

Unraveling the processes shaping mammalian gut microbiomes over evolutionary time

(2017) Mathieu Groussin et al.   Nature Communications

How to Feed the Mammalian Gut Microbiota: Bacterial and Metabolic Modulation by Dietary Fibers

(2017) Chiara Ferrario et al.   Frontiers in Microbiology

Predicting the HMA-LMA Status in Marine Sponges by Machine Learning

(2017) Lucas Moitinho-Silva et al.   Frontiers in Microbiology

The sponge microbiome project

(2017) Lucas Moitinho-Silva et al.   GigaScience

The microbiome beyond the horizon of ecological and evolutionary theory

(2017) Britt Koskella et al.   Nature Ecology & Evolution

Microbial interactions and community assembly at microscales

(2016) Otto X Cordero et al.   CURRENT OPINION IN MICROBIOLOGY

Island species-area relationships and species accumulation curves are not equivalent: an analysis of habitat island datasets

(2016) Thomas J. Matthews et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Ecology and Evolution of Microbial Competition

(2016) Melanie Ghoul et al.   TRENDS IN MICROBIOLOGY

The Sponge Hologenome

(2016) Nicole S. Webster et al.   mBio

Microbial interactions lead to rapid micro-scale successions on model marine particles

(2016) Manoshi S. Datta et al.   Nature Communications

Diversity, structure and convergent evolution of the global sponge microbiome

(2016) Torsten Thomas et al.   Nature Communications

rotl: an R package to interact with the Open Tree of Life data

(2016) François Michonneau et al.   Methods in Ecology and Evolution

Phylosymbiosis: Relationships and Functional Effects of Microbial Communities across Host Evolutionary History

(2016) Andrew W. Brooks et al.   PLOS BIOLOGY

Improved community detection in weighted bipartite networks

(2016) Stephen J. Beckett   Royal Society Open Science

The HMA-LMA Dichotomy Revisited: an Electron Microscopical Survey of 56 Sponge Species

(2016) Volker Gloeckner et al.   BIOLOGICAL BULLETIN

Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data: Fig. 1.

(2015) Kathrin P. Aßhauer et al.   BIOINFORMATICS

Similar sponge-associated bacteria can be acquired via both vertical and horizontal transmission

(2015) Detmer Sipkema et al.   ENVIRONMENTAL MICROBIOLOGY

Synthesis of phylogeny and taxonomy into a comprehensive tree of life

(2015) Cody E. Hinchliff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structure and function of the global ocean microbiome

(2015) S. Sunagawa et al.   SCIENCE

The ecology of the microbiome: Networks, competition, and stability

(2015) K. Z. Coyte et al.   SCIENCE

Phylogenetic signal in the community structure of host-specific microbiomes of tropical marine sponges

(2014) Cole G. Easson et al.   Frontiers in Microbiology

Specificity and temporal dynamics of complex bacteria–sponge symbiotic interactions

(2013) Johannes R. Björk et al.   ECOLOGY

Eco-evolutionary feedbacks drive species interactions

(2013) Andrés Andrade-Domínguez et al.   ISME Journal

Animals in a bacterial world, a new imperative for the life sciences

(2013) Margaret McFall-Ngai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Thermal stress responses in the bacterial biosphere of the Great Barrier Reef sponge,Rhopaloeides odorabile

(2012) Rachel Simister et al.   ENVIRONMENTAL MICROBIOLOGY

Multi-scale structure and geographic drivers of cross-infection within marine bacteria and phages

(2012) Cesar O Flores et al.   ISME Journal

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

Functional equivalence and evolutionary convergence in complex communities of microbial sponge symbionts

(2012) L. Fan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Marine sponges and their microbial symbionts: love and other relationships

(2011) Nicole S. Webster et al.   ENVIRONMENTAL MICROBIOLOGY

Assessing the complex sponge microbiota: core, variable and species-specific bacterial communities in marine sponges

(2011) Susanne Schmitt et al.   ISME Journal

Human nutrition, the gut microbiome and the immune system

(2011) Andrew L. Kau et al.   NATURE

Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans

(2011) B. D. Muegge et al.   SCIENCE

UniFrac: an effective distance metric for microbial community comparison

(2010) Catherine Lozupone et al.   ISME Journal

Marine Drugs from Sponge-Microbe Association—A Review

(2010) Tresa Remya A. Thomas et al.   Marine Drugs

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Marine Sponges: Potential Sources of New Antimicrobial Drugs

(2009) M. Laport et al.   CURRENT PHARMACEUTICAL BIOTECHNOLOGY

Associations between species and groups of sites: indices and statistical inference

(2009) Miquel De Cáceres et al.   ECOLOGY

Compartments in a marine food web associated with phylogeny, body mass, and habitat structure

(2009) Enrico L. Rezende et al.   ECOLOGY LETTERS

Molecular Microbial Diversity Survey of Sponge Reproductive Stages and Mechanistic Insights into Vertical Transmission of Microbial Symbionts

(2008) S. Schmitt et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Evolution of Mammals and Their Gut Microbes

(2008) R. E. Ley et al.   SCIENCE