PfAP2-EXP2, an Essential Transcription Factor for the Intraerythrocytic Development of Plasmodium falciparum

Optimization of CRISPR/Cas System for Improving Genome Editing Efficiency in Plasmodium falciparum

(2021) Yuemeng Zhao et al.   Frontiers in Microbiology

PfAP2-G2 Is Associated to Production and Maturation of Gametocytes in Plasmodium falciparum via Regulating the Expression of PfMDV-1

(2021) Yaozheng Xu et al.   Frontiers in Microbiology

Defining the Essential Exportome of the Malaria Parasite

(2021) Thorey K. Jonsdottir et al.   TRENDS IN PARASITOLOGY

The Architectural Factor HMGB1 Is Involved in Genome Organization in the Human Malaria Parasite Plasmodium falciparum

(2021) Binbin Lu et al.   mBio

Transport mechanisms at the malaria parasite-host cell interface

(2021) Josh R. Beck et al.   PLoS Pathogens

The ApiAP2 factor PfAP2-HC is an integral component of heterochromatin in the malaria parasite Plasmodium falciparum

(2021) Eilidh Carrington et al.   iScience

A cascade of transcriptional repression determines sexual commitment and development in Plasmodium falciparum

(2021) Xiaomin Shang et al.   NUCLEIC ACIDS RESEARCH

A heat-shock response regulated by the PfAP2-HS transcription factor protects human malaria parasites from febrile temperatures

(2021) Elisabet Tintó-Font et al.   Nature Microbiology

Rrp6 Regulates Heterochromatic Gene Silencing via ncRNA RUF6 Decay in Malaria Parasites

(2020) Yanting Fan et al.   mBio

Dissecting the role of PfAP2-G in malaria gametocytogenesis

(2020) Gabrielle A. Josling et al.   Nature Communications

Actin-related protein Arp4 regulates euchromatic gene expression and development through H2A.Z deposition in blood-stage Plasmodium falciparum

(2020) Hui Liu et al.   Parasites & Vectors

The PfAP2‐G2 transcription factor is a critical regulator of gametocyte maturation

(2020) Suprita Singh et al.   MOLECULAR MICROBIOLOGY

Illuminating how malaria parasites export proteins into host erythrocytes

(2019) Kathryn M. Matthews et al.   CELLULAR MICROBIOLOGY

A Historical Review of WHO Certification of Malaria Elimination

(2019) Xiao Hong Li et al.   TRENDS IN PARASITOLOGY

ApiAP2 Transcription Factors in Apicomplexan Parasites

(2019) Myriam Jeninga et al.   Pathogens

Host Cytoskeleton Remodeling throughout the Blood Stages of Plasmodium falciparum

(2019) Jan D. Warncke et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

TRIBE Uncovers the Role of Dis3 in Shaping the Dynamic Transcriptome in Malaria Parasites

(2019) Meng Liu et al.   Frontiers in Cell and Developmental Biology

Skeleton binding protein 1 (SBP1) of Plasmodium falciparum accumulates in electron-dense material before passing through the parasitophorous vacuole membrane

(2019) Hideyuki Iriko et al.   PARASITOLOGY INTERNATIONAL

Chromatin Accessibility-Based Characterization of the Gene Regulatory Network Underlying Plasmodium falciparum Blood-Stage Development

(2018) Christa Geeke Toenhake et al.   Cell Host & Microbe

Drug resistance in Plasmodium

(2018) Kasturi Haldar et al.   NATURE REVIEWS MICROBIOLOGY

Uncovering the essential genes of the human malaria parasitePlasmodium falciparumby saturation mutagenesis

(2018) Min Zhang et al.   SCIENCE

Plasmodium falciparumvar Gene Is Activated by Its Antisense Long Noncoding RNA

(2018) Qingqing Jing et al.   Frontiers in Microbiology

Single-cell RNA sequencing reveals a signature of sexual commitment in malaria parasites

(2017) Asaf Poran et al.   NATURE

Variant surface antigens of Plasmodium falciparum and their roles in severe malaria

(2017) Mats Wahlgren et al.   NATURE REVIEWS MICROBIOLOGY

Gliding motility powers invasion and egress in Apicomplexa

(2017) Karine Frénal et al.   NATURE REVIEWS MICROBIOLOGY

Three Is a Crowd – New Insights into Rosetting in Plasmodium falciparum

(2017) Xue Yan Yam et al.   TRENDS IN PARASITOLOGY

Systematic CRISPR-Cas9-Mediated Modifications of Plasmodium yoelii ApiAP2 Genes Reveal Functional Insights into Parasite Development

(2017) Cui Zhang et al.   mBio

An ApiAP2 member regulates expression of clonally variant genes of the human malaria parasite Plasmodium falciparum

(2017) Rafael M. Martins et al.   Scientific Reports

Plasmodium Helical Interspersed Subtelomeric (PHIST) Proteins, at the Center of Host Cell Remodeling

(2016) Jan D. Warncke et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

(2016) Mihaela Pertea et al.   Nature Protocols

Interactions between Plasmodium falciparum skeleton-binding protein 1 and the membrane skeleton of malaria-infected red blood cells

(2015) Lev M. Kats et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Sexual development in Plasmodium parasites: knowing when it's time to commit

(2015) Gabrielle A. Josling et al.   NATURE REVIEWS MICROBIOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

A Conserved Apicomplexan Microneme Protein Contributes to Toxoplasma gondii Invasion and Virulence

(2014) My-Hang Huynh et al.   INFECTION AND IMMUNITY

A cascade of DNA-binding proteins for sexual commitment and development in Plasmodium

(2014) Abhinav Sinha et al.   NATURE

Exonuclease-mediated degradation of nascent RNA silences genes linked to severe malaria

(2014) Qingfeng Zhang et al.   NATURE

A transcriptional switch underlies commitment to sexual development in malaria parasites

(2014) Björn F. C. Kafsack et al.   NATURE

Genome editing in the human malaria parasite Plasmodium falciparum using the CRISPR-Cas9 system

(2014) Mehdi Ghorbal et al.   NATURE BIOTECHNOLOGY

Novel Thioredoxin-Like Proteins Are Components of a Protein Complex Coating the Cortical Microtubules of Toxoplasma gondii

(2013) Jun Liu et al.   EUKARYOTIC CELL

Software for Computing and Annotating Genomic Ranges

(2013) Michael Lawrence et al.   PLoS Computational Biology

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

(2012) Guangchuang Yu et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

DNA-binding domains of plant-specific transcription factors: structure, function, and evolution

(2012) Kazuhiko Yamasaki et al.   TRENDS IN PLANT SCIENCE

DREME: motif discovery in transcription factor ChIP-seq data

(2011) Timothy L. Bailey   BIOINFORMATICS

Identification and Genome-Wide Prediction of DNA Binding Specificities for the ApiAP2 Family of Regulators from the Malaria Parasite

(2010) Tracey L. Campbell et al.   PLoS Pathogens

A Major Role for the Plasmodium falciparum ApiAP2 Protein PfSIP2 in Chromosome End Biology

(2010) Christian Flueck et al.   PLoS Pathogens

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Specific DNA-binding by Apicomplexan AP2 transcription factors

(2008) E. K. De Silva et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY