Identification and Genome-Wide Prediction of DNA Binding Specificities for the ApiAP2 Family of Regulators from the Malaria Parasite

In silico and biological survey of transcription-associated proteins implicated in the transcriptional machinery during the erythrocytic development of Plasmodium falciparum

(2010) Emmanuel Bischoff et al.   BMC GENOMICS

Conservation and divergence of known apicomplexan transcriptional regulons

(2010) Kobby Essien et al.   BMC GENOMICS

Chromatin modifications: implications in the regulation of gene expression inToxoplasma gondii

(2010) Alexandre Bougdour et al.   CELLULAR MICROBIOLOGY

Putative cis-Regulatory Elements Associated with Heat Shock Genes Activated During Excystation of Cryptosporidium parvum

(2010) Benjamin Cohn et al.   PLoS One

A Systems-Based Analysis of Plasmodium vivax Lifecycle Transcription from Human to Mosquito

(2010) Scott J. Westenberger et al.   PLoS Neglected Tropical Diseases

A Major Role for the Plasmodium falciparum ApiAP2 Protein PfSIP2 in Chromosome End Biology

(2010) Christian Flueck et al.   PLoS Pathogens

Gene regulation in the intraerythrocytic cycle of Plasmodium falciparum

(2009) Rasa Jurgelenaite et al.   BIOINFORMATICS

Identification of putative regulatory motifs in the upstream regions of co-expressed functional groups of genes in Plasmodium falciparum

(2009) Prathima Iengar et al.   BMC GENOMICS

Inconsistencies of genome annotations in apicomplexan parasites revealed by 5'-end-one-pass and full-length sequences of oligo-capped cDNAs

(2009) Hiroyuki Wakaguri et al.   BMC GENOMICS

A Multiparameter Network Reveals Extensive Divergence between C. elegans bHLH Transcription Factors

(2009) Christian A. Grove et al.   CELL

High-resolution DNA-binding specificity analysis of yeast transcription factors

(2009) C. Zhu et al.   GENOME RESEARCH

Structural Determinants of DNA Binding by a P. falciparum ApiAP2 Transcriptional Regulator

(2009) Scott E. Lindner et al.   JOURNAL OF MOLECULAR BIOLOGY

Identification of a transcription factor in the mosquito-invasive stage of malaria parasites

(2009) Masao Yuda et al.   MOLECULAR MICROBIOLOGY

Transcription factor AP2-Sp and its target genes in malarial sporozoites

(2009) Masao Yuda et al.   MOLECULAR MICROBIOLOGY

Transcriptional profiling of growth perturbations of the human malaria parasite Plasmodium falciparum

(2009) Guangan Hu et al.   NATURE BIOTECHNOLOGY

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Universal protein-binding microarrays for the comprehensive characterization of the DNA-binding specificities of transcription factors

(2009) Michael F Berger et al.   Nature Protocols

Diversity and Complexity in DNA Recognition by Transcription Factors

(2009) G. Badis et al.   SCIENCE

Identification and functional characterization of cis-regulatory elements in the apicomplexan parasite Toxoplasma gondii

(2009) Nandita Mullapudi et al.   GENOME BIOLOGY

Antigenic Variation in Plasmodium falciparum

(2008) Artur Scherf et al.   Annual Review of Microbiology

Discovering regulatory motifs in the Plasmodium genome using comparative genomics

(2008) Jie Wu et al.   BIOINFORMATICS

In silico discovery of transcription regulatory elements in Plasmodium falciparum

(2008) Jason A Young et al.   BMC GENOMICS

Distinct and stage specific nuclear factors regulate the expression of falcipains, Plasmodium falciparum cysteine proteases

(2008) Sujatha Sunil et al.   BMC MOLECULAR BIOLOGY

Variation in Homeodomain DNA Binding Revealed by High-Resolution Analysis of Sequence Preferences

(2008) Michael F. Berger et al.   CELL

Analysis of Homeodomain Specificities Allows the Family-wide Prediction of Preferred Recognition Sites

(2008) Marcus B. Noyes et al.   CELL

High Mobility Group Protein HMGB2 Is a Critical Regulator ofPlasmodiumOocyst Development

(2008) Mathieu Gissot et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Distinct Malaria Parasite Sporozoites Reveal Transcriptional Changes That Cause Differential Tissue Infection Competence in the Mosquito Vector and Mammalian Host

(2008) S. A. Mikolajczak et al.   MOLECULAR AND CELLULAR BIOLOGY

Comparative genomics of the neglected human malaria parasite Plasmodium vivax

(2008) Jane M. Carlton et al.   NATURE

The Jpred 3 secondary structure prediction server

(2008) C. Cole et al.   NUCLEIC ACIDS RESEARCH

PlasmoDB: a functional genomic database for malaria parasites

(2008) C. Aurrecoechea et al.   NUCLEIC ACIDS RESEARCH

UniPROBE: an online database of protein binding microarray data on protein-DNA interactions

(2008) D. E. Newburger et al.   NUCLEIC ACIDS RESEARCH

Specific DNA-binding by Apicomplexan AP2 transcription factors

(2008) E. K. De Silva et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The transcriptome of Plasmodium vivax reveals divergence and diversity of transcriptional regulation in malaria parasites

(2008) Z. Bozdech et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A combined transcriptome and proteome survey of malaria parasite liver stages

(2008) A. S. Tarun et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Species-Specific Transcription in Mice Carrying Human Chromosome 21

(2008) M. D. Wilson et al.   SCIENCE

Core promoters are predicted by their distinct physicochemical properties in the genome of Plasmodium falciparum

(2008) Kevin Brick et al.   GENOME BIOLOGY

Quantitative protein expression profiling reveals extensive post-transcriptional regulation and post-translational modifications in schizont-stage malaria parasites

(2008) Bernardo J Foth et al.   GENOME BIOLOGY

Comparative genomics of transcription factors and chromatin proteins in parasitic protists and other eukaryotes

(2007) Lakshminarayan M. Iyer et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY