Actin-related protein Arp4 regulates euchromatic gene expression and development through H2A.Z deposition in blood-stage Plasmodium falciparum

A Kelch13-defined endocytosis pathway mediates artemisinin resistance in malaria parasites

(2020) Jakob Birnbaum et al.   SCIENCE

The histone variant H2A.Z in gene regulation

(2019) Benedetto Daniele Giaimo et al.   Epigenetics & Chromatin

Transcriptome-wide dynamics of extensive m6A mRNA methylation during Plasmodium falciparum blood-stage development

(2019) Sebastian Baumgarten et al.   Nature Microbiology

Discovery of a new predominant cytosine DNA modification that is linked to gene expression in malaria parasites

(2019) Elie Hammam et al.   NUCLEIC ACIDS RESEARCH

Epigenetic reader complexes of the human malaria parasite, Plasmodium falciparum

(2019) Wieteke Anna Maria Hoeijmakers et al.   NUCLEIC ACIDS RESEARCH

Artemisinin Bioactivity and Resistance in Malaria Parasites

(2019) Arthur M. Talman et al.   TRENDS IN PARASITOLOGY

Comparative Heterochromatin Profiling Reveals Conserved and Unique Epigenome Signatures Linked to Adaptation and Development of Malaria Parasites

(2018) Sabine A. Fraschka et al.   Cell Host & Microbe

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

(2016) Mihaela Pertea et al.   Nature Protocols

deepTools2: a next generation web server for deep-sequencing data analysis

(2016) Fidel Ramírez et al.   NUCLEIC ACIDS RESEARCH

Sambamba: fast processing of NGS alignment formats

(2015) Artem Tarasov et al.   BIOINFORMATICS

Actin Mechanics and Fragmentation

(2015) Enrique M. De La Cruz et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Strand-specific RNA-Seq reveals widespread and developmentally regulated transcription of natural antisense transcripts in Plasmodium falciparum

(2014) T Siegel et al.   BMC GENOMICS

Exonuclease-mediated degradation of nascent RNA silences genes linked to severe malaria

(2014) Qingfeng Zhang et al.   NATURE

Genome editing in the human malaria parasite Plasmodium falciparum using the CRISPR-Cas9 system

(2014) Mehdi Ghorbal et al.   NATURE BIOTECHNOLOGY

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

H2A.Z and H2B.Z double-variant nucleosomes define intergenic regions and dynamically occupyvargene promoters in the malaria parasitePlasmodium falciparum

(2013) Michaela Petter et al.   MOLECULAR MICROBIOLOGY

The actin family member Arp6 and the histone variant H2A.Z are required for spatial positioning of chromatin in chicken cell nuclei

(2012) E. O. Maruyama et al.   JOURNAL OF CELL SCIENCE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

A Critical Role of Perinuclear Filamentous Actin in Spatial Repositioning and Mutually Exclusive Expression of Virulence Genes in Malaria Parasites

(2011) Qingfeng Zhang et al.   Cell Host & Microbe

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

Expression of P. falciparum var Genes Involves Exchange of the Histone Variant H2A.Z at the Promoter

(2011) Michaela Petter et al.   PLoS Pathogens

Actin-Related Protein Arp6 Influences H2A.Z-Dependent and -Independent Gene Expression and Links Ribosomal Protein Genes to Nuclear Pores

(2010) Takahito Yoshida et al.   PLoS Genetics

H2A.Z Demarcates Intergenic Regions of the Plasmodium falciparum Epigenome That Are Dynamically Marked by H3K9ac and H3K4me3

(2010) Richárd Bártfai et al.   PLoS Pathogens

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Global Histone Analysis by Mass Spectrometry Reveals a High Content of Acetylated Lysine Residues in the Malaria ParasitePlasmodium falciparum

(2009) Morten B. Trelle et al.   JOURNAL OF PROTEOME RESEARCH