Anthropogenic and Environmental Constraints on the Microbial Methane Cycle in Coastal Sediments

The fate of organic carbon in marine sediments - New insights from recent data and analysis

(2020) LaRowe DE et al.   EARTH-SCIENCE REVIEWS

Anaerobic methane oxidation coupled to manganese reduction by members of the Methanoperedenaceae

(2020) Andy O. Leu et al.   ISME Journal

FeGenie: A Comprehensive Tool for the Identification of Iron Genes and Iron Gene Neighborhoods in Genome and Metagenome Assemblies

(2020) Arkadiy I. Garber et al.   Frontiers in Microbiology

Rates and Microbial Players of Iron-Driven Anaerobic Oxidation of Methane in Methanic Marine Sediments

(2020) David A. Aromokeye et al.   Frontiers in Microbiology

Aquatic and terrestrial cyanobacteria produce methane

(2020) M. Bižić et al.   Science Advances

Influence of electron acceptor availability and microbial community structure on sedimentary methane oxidation in a boreal estuary

(2020) Jukka-Pekka Myllykangas et al.   BIOGEOCHEMISTRY

A complete domain-to-species taxonomy for Bacteria and Archaea

(2020) Donovan H. Parks et al.   NATURE BIOTECHNOLOGY

Niche differentiation of denitrifying anaerobic methane oxidizing bacteria and archaea leads to effective methane filtration in a Tibetan alpine wetland

(2020) Fei Xie et al.   ENVIRONMENT INTERNATIONAL

Methyl‐compounds driven benthic carbon cycling in the sulfate‐reducing sediments of South China Sea

(2020) Lei Xu et al.   ENVIRONMENTAL MICROBIOLOGY

Methanogenesis in the Lake Elton saline aquatic system

(2020) Anna Kallistova et al.   EXTREMOPHILES

Changing sediment and surface water processes increase CH4 emissions from human-impacted estuaries

(2020) Naomi S. Wells et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Macrofaunal control of microbial community structure in continental margin sediments

(2020) Longhui Deng et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Disproportionate increase in freshwater methane emissions induced by experimental warming

(2020) Yizhu Zhu et al.   Nature Climate Change

Niche Differentiation of Sulfate- and Iron-Dependent Anaerobic Methane Oxidation and Methylotrophic Methanogenesis in Deep Sea Methane Seeps

(2020) Haizhou Li et al.   Frontiers in Microbiology

Low Abundance of Methanotrophs in Sediments of Shallow Boreal Coastal Zones With High Water Methane Concentrations

(2020) Elias Broman et al.   Frontiers in Microbiology

Methane-Dependent Mineral Reduction by Aerobic Methanotrophs under Hypoxia

(2020) Yue Zheng et al.   Environmental Science & Technology Letters

Assessing the Effect of Humic Substances and Fe(III) as Potential Electron Acceptors for Anaerobic Methane Oxidation in a Marine Anoxic System

(2020) Sigrid van Grinsven et al.   Microorganisms

An Unexpectedly Broad Thermal and Salinity-Tolerant Estuarine Methanogen Community

(2020) Lynsay I. Blake et al.   Microorganisms

Investigation of central energy metabolism-related protein complexes of ANME-2d methanotrophic archaea by complexome profiling

(2020) Stefanie Berger et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Exogenous nitrogen addition inhibits sulfate-mediated anaerobic oxidation of methane in estuarine coastal sediments

(2020) Yaohong Zhang et al.   ECOLOGICAL ENGINEERING

An evolving view of methane metabolism in the Archaea

(2019) Paul N. Evans et al.   NATURE REVIEWS MICROBIOLOGY

Estuarine Sediments Exhibit Dynamic and Variable Biogeochemical Responses to Hypoxia

(2019) S. Q. Foster et al.   Journal of Geophysical Research-Biogeosciences

Contrasting Pathways for Anaerobic Methane Oxidation in Gulf of Mexico Cold Seep Sediments

(2019) Adrien Vigneron et al.   mSystems

Progress and Challenges in Ocean Metaproteomics and Proposed Best Practices for Data Sharing

(2019) Mak A. Saito et al.   JOURNAL OF PROTEOME RESEARCH

Vertical stratification of bacteria and archaea in sediments of a small boreal humic lake

(2019) Antti J Rissanen et al.   FEMS MICROBIOLOGY LETTERS

Diverse anaerobic methane‐ and multi‐carbon alkane‐metabolizing archaea coexist and show activity in Guaymas Basin hydrothermal sediment

(2019) Yinzhao Wang et al.   ENVIRONMENTAL MICROBIOLOGY

New insight into the biogeochemical cycling of methane, S and Fe above the Sulfate-Methane Transition Zone in methane hydrate-bearing sediments: A case study in the Dongsha area, South China Sea

(2019) Jiwei Li et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Kinetics of organic carbon mineralization and methane formation in marine sediments (Aarhus Bay, Denmark)

(2019) A.W. Dale et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

The Biogeochemical Sulfur Cycle of Marine Sediments

(2019) Bo Barker Jørgensen et al.   Frontiers in Microbiology

Complexome analysis of the nitrite-dependent methanotroph Methylomirabilis lanthanidiphila

(2019) Wouter Versantvoort et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Anaerobic methane oxidation is an important sink for methane in the ocean's largest oxygen minimum zone

(2019) Bo Thamdrup et al.   LIMNOLOGY AND OCEANOGRAPHY

Short-term effect of simulated salt marsh restoration by sand-amendment on sediment bacterial communities

(2019) François Thomas et al.   PLoS One

Response of marine methane dissolved concentrations and emissions in the Southern North Sea to the European 2018 heatwave

(2019) A.V. Borges et al.   CONTINENTAL SHELF RESEARCH

Manganese/iron‐supported sulfate‐dependent anaerobic oxidation of methane by archaea in lake sediments

(2019) Guangyi Su et al.   LIMNOLOGY AND OCEANOGRAPHY

Microbial community composition and functional potential in Bothnian Sea sediments is linked to Fe and S dynamics and the quality of organic matter

(2019) Olivia Rasigraf et al.   LIMNOLOGY AND OCEANOGRAPHY

Linking metagenomics to aquatic microbial ecology and biogeochemical cycles

(2019) Hans‐Peter Grossart et al.   LIMNOLOGY AND OCEANOGRAPHY

Humic substances as electron acceptors for anaerobic oxidation of methane driven by ANME-2d

(2019) Ya-Nan Bai et al.   WATER RESEARCH

Global ocean methane emissions dominated by shallow coastal waters

(2019) Thomas Weber et al.   Nature Communications

Legacy Effects of Eutrophication on Modern Methane Dynamics in a Boreal Estuary

(2019) Jukka-Pekka Myllykangas et al.   Estuaries and Coasts

Importance of hydrogenotrophic, aceticlastic and methylotrophic methanogenesis for methane production in terrestrial, aquatic and other anoxic environments: A mini review

(2019) Ralf CONRAD   PEDOSPHERE

Uncovering the Diversity and Activity of Methylotrophic Methanogens in Freshwater Wetland Soils

(2019) Adrienne B. Narrowe et al.   mSystems

Metabolic potential of microbial communities from ferruginous sediments

(2018) Aurèle Vuillemin et al.   ENVIRONMENTAL MICROBIOLOGY

Effect of pressure and temperature on anaerobic methanotrophic activities of a highly enriched ANME-2a community

(2018) Susma Bhattarai et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

A methanotrophic archaeon couples anaerobic oxidation of methane to Fe(III) reduction

(2018) Chen Cai et al.   ISME Journal

Effects of pressure, methane concentration, sulfate reduction activity, and temperature on methane production in surface sediments of the Gulf of Mexico

(2018) Guang-Chao Zhuang et al.   LIMNOLOGY AND OCEANOGRAPHY

Methylotrophic methanogenesis fuels cryptic methane cycling in marine surface sediment

(2018) Ke-Qing Xiao et al.   LIMNOLOGY AND OCEANOGRAPHY

Global diffusive fluxes of methane in marine sediments

(2018) Matthias Egger et al.   Nature Geoscience

Declining oxygen in the global ocean and coastal waters

(2018) Denise Breitburg et al.   SCIENCE

Enhancement of methanogenesis by electric syntrophy with biogenic iron-sulfide minerals

(2018) Souichiro Kato et al.   MicrobiologyOpen

Cryptic CH4 cycling in the sulfate–methane transition of marine sediments apparently mediated by ANME-1 archaea

(2018) F. Beulig et al.   ISME Journal

Comparative Genomics of Candidatus Methylomirabilis Species and Description of Ca. Methylomirabilis Lanthanidiphila

(2018) Wouter Versantvoort et al.   Frontiers in Microbiology

Response of the Anaerobic Methanotroph “Candidatus Methanoperedens nitroreducens” to Oxygen Stress

(2018) Simon Guerrero-Cruz et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Regulation of coastal methane sinks by a structured gradient of microbial methane oxidizers

(2018) Zhanfei He et al.   ENVIRONMENTAL POLLUTION

Denitrifying Anaerobic Methane Oxidation: A Previously Overlooked Methane Sink in Intertidal Zone

(2018) Jiaqi Wang et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Rates and pathways of CH4 oxidation in ferruginous Lake Matano, Indonesia

(2018) Arne Sturm et al.   Geobiology

Iron oxide reduction in methane-rich deep Baltic Sea sediments

(2017) Matthias Egger et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Nitrogen Metabolism Genes from Temperate Marine Sediments

(2017) Carolina Reyes et al.   MARINE BIOTECHNOLOGY

Distribution and isotopic composition of trimethylamine, dimethylsulfide and dimethylsulfoniopropionate in marine sediments

(2017) Guang-Chao Zhuang et al.   MARINE CHEMISTRY

Anaerobic Methane-Oxidizing Microbial Community in a Coastal Marine Sediment: Anaerobic Methanotrophy Dominated by ANME-3

(2017) Susma Bhattarai et al.   MICROBIAL ECOLOGY

Anaerobic oxidation of methane by aerobic methanotrophs in sub-Arctic lake sediments

(2017) Karla Martinez-Cruz et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Bioturbation as a key driver behind the dominance of Bacteria over Archaea in near-surface sediment

(2017) Xihan Chen et al.   Scientific Reports

From Genes to Ecosystems in Microbiology: Modeling Approaches and the Importance of Individuality

(2017) Jan-Ulrich Kreft et al.   Frontiers in Microbiology

Aerobic and Anaerobic Methanotrophic Communities Associated with Methane Hydrates Exposed on the Seafloor: A High-Pressure Sampling and Stable Isotope-Incubation Experiment

(2017) David H. Case et al.   Frontiers in Microbiology

Microbial Community Composition and Functional Capacity in a Terrestrial Ferruginous, Sulfate-Depleted Mud Volcano

(2017) Tzu-Hsuan Tu et al.   Frontiers in Microbiology

Co-existence of Methanogenesis and Sulfate Reduction with Common Substrates in Sulfate-Rich Estuarine Sediments

(2017) Michal Sela-Adler et al.   Frontiers in Microbiology

Global Biogeographic Analysis of Methanogenic Archaea Identifies Community-Shaping Environmental Factors of Natural Environments

(2017) Xi Wen et al.   Frontiers in Microbiology

Metagenomic potential for and diversity of N-cycle driving microorganisms in the Bothnian Sea sediment

(2017) Olivia Rasigraf et al.   MicrobiologyOpen

Genomic insights into potential interdependencies in microbial hydrocarbon and nutrient cycling in hydrothermal sediments

(2017) Nina Dombrowski et al.   Microbiome

Shifts in coastal sediment oxygenation cause pronounced changes in microbial community composition and associated metabolism

(2017) Elias Broman et al.   Microbiome

Methane fluxes from coastal sediments are enhanced by macrofauna

(2017) Stefano Bonaglia et al.   Scientific Reports

Comparative metagenomics of hydrocarbon and methane seeps of the Gulf of Mexico

(2017) Adrien Vigneron et al.   Scientific Reports

Anaerobic methane oxidation coupled to nitrite reduction can be a potential methane sink in coastal environments

(2016) Li-dong Shen et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Shelf-to-basin iron shuttling enhances vivianite formation in deep Baltic Sea sediments

(2016) Daniel C. Reed et al.   EARTH AND PLANETARY SCIENCE LETTERS

New Methyloceanibacter diversity from North Sea sediments includes methanotroph containing solely the soluble methane monooxygenase

(2016) Bram Vekeman et al.   ENVIRONMENTAL MICROBIOLOGY

Methanogens rapidly transition from methane production to iron reduction

(2016) O. Sivan et al.   Geobiology

Multiple evidence for methylotrophic methanogenesis as the dominant methanogenic pathway in hypersaline sediments from the Orca Basin, Gulf of Mexico

(2016) Guang-Chao Zhuang et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

NC10 bacteria in marine oxygen minimum zones

(2016) Cory C Padilla et al.   ISME Journal

Metagenomic analysis reveals the contribution of anaerobic methanotroph-1b in the oxidation of methane at the Ulleung Basin, East Sea of Korea

(2016) Jin-Woo Lee et al.   JOURNAL OF MICROBIOLOGY

Methane emissions from oceans, coasts, and freshwater habitats: New perspectives and feedbacks on climate

(2016) Leila J. Hamdan et al.   LIMNOLOGY AND OCEANOGRAPHY

Aquatic methane dynamics in a human-impacted river-floodplain of the Danube

(2016) Anna Katarzyna Sieczko et al.   LIMNOLOGY AND OCEANOGRAPHY

Iron-dependent anaerobic oxidation of methane in coastal surface sediments: Potential controls and impact

(2016) Jurjen Rooze et al.   LIMNOLOGY AND OCEANOGRAPHY

Methane concentrations increase in bottom waters during summertime anoxia in the highly eutrophic estuary, Chesapeake Bay, U.S.A.

(2016) Lauren Gelesh et al.   LIMNOLOGY AND OCEANOGRAPHY

Greenhouse gas flux from headwater streams in New Hampshire, USA: Patterns and drivers

(2016) John D. Schade et al.   LIMNOLOGY AND OCEANOGRAPHY

Genome Characteristics of Two Novel Type I Methanotrophs Enriched from North Sea Sediments Containing Exclusively a Lanthanide-Dependent XoxF5-Type Methanol Dehydrogenase

(2016) Bram Vekeman et al.   MICROBIAL ECOLOGY

Rapid Sediment Accumulation Results in High Methane Effluxes from Coastal Sediments

(2016) Matthias Egger et al.   PLoS One

Integrating biogeochemistry with multiomic sequence information in a model oxygen minimum zone

(2016) Stilianos Louca et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Archaea catalyze iron-dependent anaerobic oxidation of methane

(2016) Katharina F. Ettwig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Artificial electron acceptors decouple archaeal methane oxidation from sulfate reduction

(2016) S. Scheller et al.   SCIENCE

Nitrate- and nitrite-dependent anaerobic oxidation of methane

(2016) Cornelia U. Welte et al.   Environmental Microbiology Reports

A novel denitrifying methanotroph of the NC10 phylum and its microcolony

(2016) Zhanfei He et al.   Scientific Reports

Methane oxidation coupled to nitrate reduction under hypoxia by the GammaproteobacteriumMethylomonas denitrificans, sp. nov. type strain FJG1

(2015) K. Dimitri Kits et al.   ENVIRONMENTAL MICROBIOLOGY

Vivianite is a major sink for phosphorus in methanogenic coastal surface sediments

(2015) Matthias Egger et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics

(2015) P. N. Evans et al.   SCIENCE

A Metagenomics-Based Metabolic Model of Nitrate-Dependent Anaerobic Oxidation of Methane by Methanoperedens-Like Archaea

(2015) Arslan Arshad et al.   Frontiers in Microbiology

Growth of Anaerobic Methane-Oxidizing Archaea and Sulfate-Reducing Bacteria in a High-Pressure Membrane Capsule Bioreactor

(2014) Peer H. A. Timmers et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Distribution and environmental significance of nitrite-dependent anaerobic methane-oxidising bacteria in natural ecosystems

(2014) Li-dong Shen et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Iron-Mediated Anaerobic Oxidation of Methane in Brackish Coastal Sediments

(2014) Matthias Egger et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Methane fluxes show consistent temperature dependence across microbial to ecosystem scales

(2014) Gabriel Yvon-Durocher et al.   NATURE

Gene-centric approach to integrating environmental genomics and biogeochemical models

(2014) Daniel C. Reed et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deoxygenation of the Baltic Sea during the last century

(2014) J. Carstensen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The environmental controls that govern the end product of bacterial nitrate respiration

(2014) B. Kraft et al.   SCIENCE

Impact of electron acceptor availability on the anaerobic oxidation of methane in coastal freshwater and brackish wetland sediments

(2013) Katherine E.A. Segarra et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Methylomarinovum caldicuralii gen. nov., sp. nov., a moderately thermophilic methanotroph isolated from a shallow submarine hydrothermal system, and proposal of the family Methylothermaceae fam. nov.

(2013) H. Hirayama et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage

(2013) Mohamed F. Haroon et al.   NATURE

The changing carbon cycle of the coastal ocean

(2013) James E. Bauer et al.   NATURE

Three decades of global methane sources and sinks

(2013) Stefanie Kirschke et al.   Nature Geoscience

Effect of oxygen on the anaerobic methanotroph ‘Candidatus Methylomirabilis oxyfera’: kinetic and transcriptional analysis

(2012) Francisca A. Luesken et al.   ENVIRONMENTAL MICROBIOLOGY

Integrated metagenomic and metaproteomic analyses of an ANME-1-dominated community in marine cold seep sediments

(2012) Runar Stokke et al.   ENVIRONMENTAL MICROBIOLOGY

The Impact of Sediment and Carbon Fluxes on the Biogeochemistry of Methane and Sulfur in Littoral Baltic Sea Sediments (Himmerfjärden, Sweden)

(2012) Nguyen Manh Thang et al.   Estuaries and Coasts

Methane emissions from wetlands: biogeochemical, microbial, and modeling perspectives from local to global scales

(2012) Scott D. Bridgham et al.   GLOBAL CHANGE BIOLOGY

Stratification of Archaea in the Deep Sediments of a Freshwater Meromictic Lake: Vertical Shift from Methanogenic to Uncultured Archaeal Lineages

(2012) Guillaume Borrel et al.   PLoS One

Synthesis of Methylphosphonic Acid by Marine Microbes: A Source for Methane in the Aerobic Ocean

(2012) W. W. Metcalf et al.   SCIENCE

Potential ofpmoAAmplicon Pyrosequencing for Methanotroph Diversity Studies

(2011) Claudia Lüke et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Diversity and enrichment of nitrite-dependent anaerobic methane oxidizing bacteria from wastewater sludge

(2011) Francisca A. Luesken et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Quantitative analysis of anaerobic oxidation of methane (AOM) in marine sediments: A modeling perspective

(2011) P. Regnier et al.   EARTH-SCIENCE REVIEWS

Environmental evidence for net methane production and oxidation in putative ANaerobic MEthanotrophic (ANME) archaea

(2011) Karen G. Lloyd et al.   ENVIRONMENTAL MICROBIOLOGY

Geochemical evidence for iron-mediated anaerobic oxidation of methane

(2011) Orit Sivan et al.   LIMNOLOGY AND OCEANOGRAPHY

Annual cycle of hypoxia off the Changjiang (Yangtze River) Estuary

(2011) Baodong Wang et al.   MARINE ENVIRONMENTAL RESEARCH

Effect of methanogenic substrates on anaerobic oxidation of methane and sulfate reduction by an anaerobic methanotrophic enrichment

(2010) Roel J. W. Meulepas et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Methanogenesis and sulfate reduction in marine sediments: A new model

(2010) Richard M. Mitterer   EARTH AND PLANETARY SCIENCE LETTERS

Nitrite-driven anaerobic methane oxidation by oxygenic bacteria

(2010) Katharina F. Ettwig et al.   NATURE

The Growing Human Footprint on Coastal and Open-Ocean Biogeochemistry

(2010) S. C. Doney   SCIENCE

Anaerobic Oxidation of Methane: Progress with an Unknown Process

(2009) Katrin Knittel et al.   Annual Review of Microbiology

Archaeal and Bacterial Communities Respond Differently to Environmental Gradients in Anoxic Sediments of a California Hypersaline Lake, the Salton Sea

(2009) B. K. Swan et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Manganese- and Iron-Dependent Marine Methane Oxidation

(2009) E. J. Beal et al.   SCIENCE

Environmental, genomic and taxonomic perspectives on methanotrophicVerrucomicrobia

(2009) Huub J. M. Op den Camp et al.   Environmental Microbiology Reports

The global methane cycle: recent advances in understanding the microbial processes involved

(2009) Ralf Conrad   Environmental Microbiology Reports

Methanotrophic symbioses in marine invertebrates

(2009) Jillian M. Petersen et al.   Environmental Microbiology Reports

Planktonic and Sediment-Associated Aerobic Methanotrophs in Two Seep Systems along the North American Margin

(2008) P. L. Tavormina et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Anaerobic oxidation of methane (AOM) in marine sediments from the Skagerrak (Denmark): II. Reaction-transport modeling

(2008) A.W. Dale et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Spreading Dead Zones and Consequences for Marine Ecosystems

(2008) R. J. Diaz et al.   SCIENCE

Methane efflux from marine sediments in passive and active margins: Estimations from bioenergetic reaction–transport simulations

(2007) A.W. Dale et al.   EARTH AND PLANETARY SCIENCE LETTERS