Integrating biogeochemistry with multiomic sequence information in a model oxygen minimum zone

Cultivation of a chemoautotroph from the SUP05 clade of marine bacteria that produces nitrite and consumes ammonium

(2016) Vega Shah et al.   ISME Journal

A method for simultaneous measurement of soil bacterial abundances and community composition via 16S rRNA gene sequencing

(2016) Wenke Smets et al.   SOIL BIOLOGY & BIOCHEMISTRY

Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data: Fig. 1.

(2015) Kathrin P. Aßhauer et al.   BIOINFORMATICS

Rare taxa have potential to make metabolic contributions in enhanced biological phosphorus removal ecosystems

(2015) Christopher E. Lawson et al.   ENVIRONMENTAL MICROBIOLOGY

Predicting the response of the deep-ocean microbiome to geochemical perturbations by hydrothermal vents

(2015) Daniel C Reed et al.   ISME Journal

Dispersing misconceptions and identifying opportunities for the use of 'omics' in soil microbial ecology

(2015) James I. Prosser   NATURE REVIEWS MICROBIOLOGY

Natural Bacterial Communities Serve as Quantitative Geochemical Biosensors

(2015) Mark B. Smith et al.   mBio

Interannual and Subdecadal Variability in the Nutrient Geochemistry of the Cariaco Basin

(2014) Mary Scranton et al.   OCEANOGRAPHY

Gene-centric approach to integrating environmental genomics and biogeochemical models

(2014) Daniel C. Reed et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metaproteomics reveals differential modes of metabolic coupling among ubiquitous oxygen minimum zone microbes

(2014) A. K. Hawley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Organic Matter Stoichiometry, Flux, and Oxygen Control Nitrogen Loss in the Ocean

(2014) A. R. Babbin et al.   SCIENCE

Assessing technical performance in differential gene expression experiments with external spike-in RNA control ratio mixtures

(2014) Sarah A. Munro et al.   Nature Communications

Anaerobic ammonium oxidation (anammox) bacteria and sulfide-dependent denitrifiers coexist in the water column of a meromictic south-alpine lake

(2013) Christine B. Wenk et al.   LIMNOLOGY AND OCEANOGRAPHY

Nitrogen losses in anoxic marine sediments driven by Thioploca–anammox bacterial consortia

(2013) M. G. Prokopenko et al.   NATURE

Giant Hydrogen Sulfide Plume in the Oxygen Minimum Zone off Peru Supports Chemolithoautotrophy

(2013) Harald Schunck et al.   PLoS One

A Metastable Equilibrium Model for the Relative Abundances of Microbial Phyla in a Hot Spring

(2013) Jeffrey M. Dick et al.   PLoS One

Geomicrobial Kinetics: Extrapolating Laboratory Studies to Natural Environments

(2012) Qusheng Jin et al.   GEOMICROBIOLOGY JOURNAL

Sizing up metatranscriptomics

(2012) Mary Ann Moran et al.   ISME Journal

Microbial ecology of expanding oxygen minimum zones

(2012) Jody J. Wright et al.   NATURE REVIEWS MICROBIOLOGY

Ubiquitous Dissolved Inorganic Carbon Assimilation by Marine Bacteria in the Pacific Northwest Coastal Ocean as Determined by Stable Isotope Probing

(2012) Suzanne DeLorenzo et al.   PLoS One

Microbial oceanography of anoxic oxygen minimum zones

(2012) O. Ulloa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Thermodynamics of Microbial Growth Coupled to Metabolism of Glucose, Ethanol, Short-Chain Organic Acids, and Hydrogen

(2011) Eric E. Roden et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The conundrum between chemoautotrophic production and reductant and oxidant supply: A case study from the Cariaco Basin

(2011) Xiaona N. Li et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Coupled pre-mRNA and mRNA dynamics unveil operational strategies underlying transcriptional responses to stimuli

(2011) A. Zeisel et al.   Molecular Systems Biology

Microbial Nitrogen Cycling Processes in Oxygen Minimum Zones

(2010) Phyllis Lam et al.   Annual Review of Marine Science

High abundance and dark CO2fixation of chemolithoautotrophic prokaryotes in anoxic waters of the Baltic Sea

(2010) Jost GÜnter et al.   LIMNOLOGY AND OCEANOGRAPHY

Impact of deep-water renewal events on fixed nitrogen loss from seasonally-anoxic Saanich Inlet

(2010) Cara C. Manning et al.   MARINE CHEMISTRY

Metagenomes from High-Temperature Chemotrophic Systems Reveal Geochemical Controls on Microbial Community Structure and Function

(2010) William P. Inskeep et al.   PLoS One

Microbial community dynamics in a seasonally anoxic fjord: Saanich Inlet, British Columbia

(2009) Elena Zaikova et al.   ENVIRONMENTAL MICROBIOLOGY

Oceans apart

(2009) Maren Voss et al.   NATURE

Denitrification as the dominant nitrogen loss process in the Arabian Sea

(2009) B. B. Ward et al.   NATURE

Adaptive prediction of environmental changes by microorganisms

(2009) Amir Mitchell et al.   NATURE

Revising the nitrogen cycle in the Peruvian oxygen minimum zone

(2009) P. Lam et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metagenome of a Versatile Chemolithoautotroph from Expanding Oceanic Dead Zones

(2009) D. A. Walsh et al.   SCIENCE

Epsilonproteobacteria Represent the Major Portion of Chemoautotrophic Bacteria in Sulfidic Waters of Pelagic Redoxclines of the Baltic and Black Seas

(2008) J. Grote et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Microbial Engines That Drive Earth's Biogeochemical Cycles

(2008) P. G. Falkowski et al.   SCIENCE

Emerging tools for measuring and modeling the in situ activity of soil extracellular enzymes

(2008) Matthew D. Wallenstein et al.   SOIL BIOLOGY & BIOCHEMISTRY