Low Abundance of Methanotrophs in Sediments of Shallow Boreal Coastal Zones With High Water Methane Concentrations

Decreased Snow Cover Stimulates Under-Ice Primary Producers but Impairs Methanotrophic Capacity

(2019) Sarahi L. Garcia et al.   mSphere

Very Strong Atmospheric Methane Growth in the 4 Years 2014–2017: Implications for the Paris Agreement

(2019) E. G. Nisbet et al.   GLOBAL BIOGEOCHEMICAL CYCLES

Communal metabolism by Methylococcaceae and Methylophilaceae is driving rapid aerobic methane oxidation in sediments of a shallow seep near Elba, Italy

(2019) Martin Taubert et al.   ENVIRONMENTAL MICROBIOLOGY

Light-Dependent Methane Oxidation Is the Major Process of the Methane Cycle in the Water Column of the Bol’shie Khruslomeny Polar Lake

(2019) A. S. Savvichev et al.   MICROBIOLOGY

Global ocean methane emissions dominated by shallow coastal waters

(2019) Thomas Weber et al.   Nature Communications

Living apart together—bacterial volatiles influence methanotrophic growth and activity

(2018) A. J. Veraart et al.   ISME Journal

Methanogens: biochemical background and biotechnological applications

(2018) Franziska Enzmann et al.   AMB Express

Members of the Genus Methylobacter Are Inferred To Account for the Majority of Aerobic Methane Oxidation in Oxic Soils from a Freshwater Wetland

(2018) Garrett J. Smith et al.   mBio

Phylogenomic Analysis of the Gammaproteobacterial Methanotrophs (Order Methylococcales) Calls for the Reclassification of Members at the Genus and Species Levels

(2018) Fabini D. Orata et al.   Frontiers in Microbiology

Ammonium conversion and its feedback effect on methane oxidation of Methylosinus sporium

(2017) Ruo He et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

MultiQC: summarize analysis results for multiple tools and samples in a single report

(2016) Philip Ewels et al.   BIOINFORMATICS

Greenhouse Gas Emissions from Reservoir Water Surfaces: A New Global Synthesis

(2016) Bridget R. Deemer et al.   BIOSCIENCE

Methane fluxes from the sea to the atmosphere across the Siberian shelf seas

(2016) Brett F. Thornton et al.   GEOPHYSICAL RESEARCH LETTERS

Radiative forcing of carbon dioxide, methane, and nitrous oxide: A significant revision of the methane radiative forcing

(2016) M. Etminan et al.   GEOPHYSICAL RESEARCH LETTERS

High methane emissions from thermokarst lakes in subarctic peatlands

(2016) Alex Matveev et al.   LIMNOLOGY AND OCEANOGRAPHY

MEGAHIT v1.0: A fast and scalable metagenome assembler driven by advanced methodologies and community practices

(2016) Dinghua Li et al.   METHODS

Massive marine methane emissions from near-shore shallow coastal areas

(2016) Alberto V. Borges et al.   Scientific Reports

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

(2015) Alma E. Parada et al.   ENVIRONMENTAL MICROBIOLOGY

Environmental factors affecting methane distribution and bacterial methane oxidation in the German Bight (North Sea)

(2015) Roman Osudar et al.   ESTUARINE COASTAL AND SHELF SCIENCE

Diversity and Habitat Preferences of Cultivated and Uncultivated Aerobic Methanotrophic Bacteria Evaluated Based on pmoA as Molecular Marker

(2015) Claudia Knief   Frontiers in Microbiology

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

The more, the merrier: heterotroph richness stimulates methanotrophic activity

(2014) Adrian Ho et al.   ISME Journal

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Explicet: graphical user interface software for metadata-driven management, analysis and visualization of microbiome data

(2013) C. E. Robertson et al.   BIOINFORMATICS

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

Ebullition and storm-induced methane release from the East Siberian Arctic Shelf

(2013) Natalia Shakhova et al.   Nature Geoscience

Three decades of global methane sources and sinks

(2013) Stefanie Kirschke et al.   Nature Geoscience

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data

(2012) Evguenia Kopylova et al.   BIOINFORMATICS

Methane emissions from wetlands: biogeochemical, microbial, and modeling perspectives from local to global scales

(2012) Scott D. Bridgham et al.   GLOBAL CHANGE BIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome

(2012) Daniel McDonald et al.   GigaScience

Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea

(2011) Daniel PR Herlemann et al.   ISME Journal

Global atmospheric methane: budget, changes and dangers

(2011) E. J. Dlugokencky et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES

Freshwater Methane Emissions Offset the Continental Carbon Sink

(2011) D. Bastviken et al.   SCIENCE

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Nitrite-driven anaerobic methane oxidation by oxygenic bacteria

(2010) Katharina F. Ettwig et al.   NATURE

Anaerobic Oxidation of Methane: Progress with an Unknown Process

(2009) Katrin Knittel et al.   Annual Review of Microbiology

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(2009) H. Li et al.   BIOINFORMATICS

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(2009) M. D. Robinson et al.   BIOINFORMATICS

Ammonia-oxidizing archaea involved in nitrogen removal

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