Metagenomic potential for and diversity of N-cycle driving microorganisms in the Bothnian Sea sediment

Quantifying manganese and nitrogen cycle coupling in manganese-rich, organic carbon-starved marine sediments: Examples from the Clarion-Clipperton fracture zone

(2016) José M. Mogollón et al.   GEOPHYSICAL RESEARCH LETTERS

Pathways and key intermediates required for obligate aerobic ammonia-dependent chemolithotrophy in bacteria and Thaumarchaeota

(2016) Jessica A Kozlowski et al.   ISME Journal

Characterization of Anammox Hydrazine Dehydrogenase, a Key N2-producing Enzyme in the Global Nitrogen Cycle

(2016) Wouter J. Maalcke et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Genome-based microbial ecology of anammox granules in a full-scale wastewater treatment system

(2016) Daan R. Speth et al.   Nature Communications

Metagenomic analysis of nitrogen and methane cycling in the Arabian Sea oxygen minimum zone

(2016) Claudia Lüke et al.   PeerJ

Genomic Expansion of Domain Archaea Highlights Roles for Organisms from New Phyla in Anaerobic Carbon Cycling

(2015) Cindy J. Castelle et al.   CURRENT BIOLOGY

Methane oxidation coupled to nitrate reduction under hypoxia by the GammaproteobacteriumMethylomonas denitrificans, sp. nov. type strain FJG1

(2015) K. Dimitri Kits et al.   ENVIRONMENTAL MICROBIOLOGY

Critical biogeochemical functions in the subsurface are associated with bacteria from new phyla and little studied lineages

(2015) Laura A. Hug et al.   ENVIRONMENTAL MICROBIOLOGY

Dynamic hydrologic and biogeochemical processes drive microbially enhanced iron and sulfur cycling within the intertidal mixing zone of a beach aquifer

(2015) Sean M. McAllister et al.   LIMNOLOGY AND OCEANOGRAPHY

Iron-Mediated Anaerobic Oxidation of Methane in Brackish Coastal Sediments

(2014) Matthias Egger et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Linking DNRA community structure and activity in a shallow lagoonal estuarine system

(2014) Bongkeun Song et al.   Frontiers in Microbiology

Thaumarchaeotal Signature Gene Distribution in Sediments of the Northern South China Sea: an Indicator of the Metabolic Intersection of the Marine Carbon, Nitrogen, and Phosphorus Cycles?

(2013) Hongyue Dang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Seasonal Transition of Active Bacterial and Archaeal Communities in Relation to Water Management in Paddy Soils

(2013) Hideomi Itoh et al.   MICROBES AND ENVIRONMENTS

Coupled Dynamics of Iron and Phosphorus in Sediments of an Oligotrophic Coastal Basin and the Impact of Anaerobic Oxidation of Methane

(2013) Caroline P. Slomp et al.   PLoS One

Molecular Detection of Candidatus Scalindua pacifica and Environmental Responses of Sediment Anammox Bacterial Community in the Bohai Sea, China

(2013) Hongyue Dang et al.   PLoS One

A Metagenomics Transect into the Deepest Point of the Baltic Sea Reveals Clear Stratification of Microbial Functional Capacities

(2013) Petter Thureborn et al.   PLoS One

Presence and diversity of anammox bacteria in cold hydrocarbon-rich seeps and hydrothermal vent sediments of the Guaymas Basin

(2013) Lina Russ et al.   Frontiers in Microbiology

Microbial diversity in the deep-subsurface hydrothermal aquifer feeding the giant gypsum crystal-bearing Naica Mine, Mexico

(2013) Marie Ragon et al.   Frontiers in Microbiology

The Effects of Hypoxia on Sediment Nitrogen Cycling in the Baltic Sea

(2012) Helena Jäntti et al.   AMBIO

Physiology and Diversity of Ammonia-Oxidizing Archaea

(2012) David A. Stahl et al.   Annual Review of Microbiology

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

(2012) Elmar Pruesse et al.   BIOINFORMATICS

The metagenome of the marine anammox bacterium ‘CandidatusScalindua profunda’ illustrates the versatility of this globally important nitrogen cycle bacterium

(2012) Jack van de Vossenberg et al.   ENVIRONMENTAL MICROBIOLOGY

Diversity, abundance and expression of nitrite reductase (nirK)-like genes in marine thaumarchaea

(2012) Marie B Lund et al.   ISME Journal

Microbial Diversity in Deep-sea Methane Seep Sediments Presented by SSU rRNA Gene Tag Sequencing

(2012) Takuro Nunoura et al.   MICROBES AND ENVIRONMENTS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Correlating microbial community profiles with geochemical data in highly stratified sediments from the Arctic Mid-Ocean Ridge

(2012) S. L. Jorgensen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hydrazine Synthase, a Unique Phylomarker with Which To Study the Presence and Biodiversity of Anammox Bacteria

(2011) Harry R. Harhangi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Seasonal variation in nitrification and nitrate-reduction pathways in coastal sediments in the Gulf of Finland, Baltic Sea

(2011) H Jäntti et al.   AQUATIC MICROBIAL ECOLOGY

Nitrifying and denitrifying pathways of methanotrophic bacteria

(2011) Lisa Y. Stein et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Integrative analysis of environmental sequences using MEGAN4

(2011) D. H. Huson et al.   GENOME RESEARCH

Contribution of crenarchaeal autotrophic ammonia oxidizers to the dark primary production in Tyrrhenian deep waters (Central Mediterranean Sea)

(2011) Michail M Yakimov et al.   ISME Journal

Thaumarchaeotes abundant in refinery nitrifying sludges express amoA but are not obligate autotrophic ammonia oxidizers

(2011) M. Mussmann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Anaerobic ammonium oxidation mediated by Mn-oxides: from sediment to strain level

(2011) Cedric Javanaud et al.   RESEARCH IN MICROBIOLOGY

Isotopic Signature of N2O Produced by Marine Ammonia-Oxidizing Archaea

(2011) A. E. Santoro et al.   SCIENCE

Anaerobic Oxidation of Methane at a Marine Methane Seep in a Forearc Sediment Basin off Sumatra, Indian Ocean

(2011) Michael Siegert et al.   Frontiers in Microbiology

A Comparative Genomic Analysis of Energy Metabolism in Sulfate Reducing Bacteria and Archaea

(2011) Inês A. Cardoso Pereira et al.   Frontiers in Microbiology

Metabolic Flexibility of Sulfate-Reducing Bacteria

(2011) Caroline M. Plugge et al.   Frontiers in Microbiology

Environmental Factors Shape Sediment Anammox Bacterial Communities in Hypernutrified Jiaozhou Bay, China

(2010) H. Dang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Phylogenetic diversity and metagenomics of candidate division OP3

(2010) Jana Glöckner et al.   ENVIRONMENTAL MICROBIOLOGY

Activity, abundance and diversity of nitrifying archaea and bacteria in the central California Current

(2010) Alyson E. Santoro et al.   ENVIRONMENTAL MICROBIOLOGY

The Effects of Salinity on Nitrogen Losses from an Oligohaline Estuarine Sediment

(2010) Anne E. Giblin et al.   Estuaries and Coasts

Diversity, abundance and distribution of amoA-encoding archaea in deep-sea methane seep sediments of the Okhotsk Sea

(2010) Hongyue Dang et al.   FEMS MICROBIOLOGY ECOLOGY

Anammox Bacterial Diversity in Various Aquatic Ecosystems Based on the Detection of Hydrazine Oxidase Genes (hzoA/hzoB)

(2010) Matthew D. Hirsch et al.   MICROBIAL ECOLOGY

Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea

(2010) C. B. Walker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diverse and Novel nifH and nifH-Like Gene Sequences in the Deep-Sea Methane Seep Sediments of the Okhotsk Sea

(2009) H. Dang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Autotrophic denitrification in nitrate-induced marine sediment remediation and Sulfurimonas denitrificans-like bacteria

(2009) M. Zhang et al.   CHEMOSPHERE

Archaeal communities associated with shallow to deep subseafloor sediments of the New Caledonia Basin

(2009) Erwan G. Roussel et al.   ENVIRONMENTAL MICROBIOLOGY

Abundance ofZetaproteobacteriawithin crustal fluids in back-arc hydrothermal fields of the Southern Mariana Trough

(2009) Shingo Kato et al.   ENVIRONMENTAL MICROBIOLOGY

Biogeographical distribution of diverse anaerobic ammonium oxidizing (anammox) bacteria in Cape Fear River Estuary

(2009) Olivia R. Dale et al.   ENVIRONMENTAL MICROBIOLOGY

The spreading of eutrophication in the eastern coast of the Gulf of Bothnia, northern Baltic Sea – An analysis in time and space

(2009) Cecilia Lundberg et al.   ESTUARINE COASTAL AND SHELF SCIENCE

Molecular detection of anammox bacteria in terrestrial ecosystems: distribution and diversity

(2009) Sylvia Humbert et al.   ISME Journal

Unique archaeal assemblages in the Arctic Ocean unveiled by massively parallel tag sequencing

(2009) Pierre E Galand et al.   ISME Journal

Electron transfer in syntrophic communities of anaerobic bacteria and archaea

(2009) Alfons J. M. Stams et al.   NATURE REVIEWS MICROBIOLOGY

Physiology, Ecology, Phylogeny, and Genomics of Microorganisms Capable of Syntrophic Metabolism

(2008) Michael J. McInerney et al.   Annals of the New York Academy of Sciences

Epsilonproteobacteria Represent the Major Portion of Chemoautotrophic Bacteria in Sulfidic Waters of Pelagic Redoxclines of the Baltic and Black Seas

(2008) J. Grote et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Anammox bacteria and the anaerobic oxidation of ammonium in the oxygen minimum zone off northern Chile

(2008) Alexander Galán et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Past occurrences of hypoxia in the Baltic Sea and the role of climate variability, environmental change and human impact

(2008) Lovisa Zillén et al.   EARTH-SCIENCE REVIEWS

Active bacterial community structure along vertical redox gradients in Baltic Sea sediment

(2008) Anna Edlund et al.   ENVIRONMENTAL MICROBIOLOGY

13C-isotope analyses reveal that chemolithoautotrophicGamma- andEpsilonproteobacteriafeed a microbial food web in a pelagic redoxcline of the central Baltic Sea

(2008) Sabine Glaubitz et al.   ENVIRONMENTAL MICROBIOLOGY

Molecular and biogeochemical evidence for ammonia oxidation by marine Crenarchaeota in the Gulf of California

(2008) J Michael Beman et al.   ISME Journal