Response of the Anaerobic Methanotroph “Candidatus Methanoperedens nitroreducens” to Oxygen Stress

Current perspectives on the application of N-damo and anammox in wastewater treatment

(2018) Maartje AHJ van Kessel et al.   CURRENT OPINION IN BIOTECHNOLOGY

Methane Feedbacks to the Global Climate System in a Warmer World

(2018) Joshua F. Dean et al.   REVIEWS OF GEOPHYSICS

Effect of low concentrations of dissolved oxygen on the activity of denitrifying methanotrophic bacteria

(2018) Christel Kampman et al.   WATER SCIENCE AND TECHNOLOGY

Different clusters of Candidatus ‘Methanoperedens nitroreducens’-like archaea as revealed by high-throughput sequencing with new primers

(2018) Sai Xu et al.   Scientific Reports

Long-term nitrate removal through methane-dependent denitrification microorganisms in sequencing batch reactors fed with only nitrate and methane

(2018) Weiwei Li et al.   AMB Express

Comparative Genomics of Candidatus Methylomirabilis Species and Description of Ca. Methylomirabilis Lanthanidiphila

(2018) Wouter Versantvoort et al.   Frontiers in Microbiology

Mimicking microbial interactions under nitrate-reducing conditions in an anoxic bioreactor: enrichment of novel Nitrospirae bacteria distantly related to Thermodesulfovibrio

(2017) Arslan Arshad et al.   ENVIRONMENTAL MICROBIOLOGY

Metabolic shift at the class level sheds light on adaptation of methanogens to oxidative environments

(2017) Zhe Lyu et al.   ISME Journal

Wastewater Opportunities for Denitrifying Anaerobic Methane Oxidation

(2017) Yali Wang et al.   TRENDS IN BIOTECHNOLOGY

Methanogenesis in oxygenated soils is a substantial fraction of wetland methane emissions

(2017) Jordan C. Angle et al.   Nature Communications

Reverse Methanogenesis and Respiration in Methanotrophic Archaea

(2017) Peer H. A. Timmers et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

The FinR-regulated essential gene fprA, encoding ferredoxin NADP+ reductase: Roles in superoxide-mediated stress protection and virulence of Pseudomonas aeruginosa

(2017) Siriwan Boonma et al.   PLoS One

Effect of oxygen on the microbial activities of thermophilic anaerobic biomass

(2016) C. Pedizzi et al.   BIORESOURCE TECHNOLOGY

Spatial scale drives patterns in soil bacterial diversity

(2016) Sarah L. O'Brien et al.   ENVIRONMENTAL MICROBIOLOGY

Production of uracil from methane by a newly isolated Methylomonas sp. SW1

(2016) Sangwoo Kim et al.   JOURNAL OF BIOTECHNOLOGY

Archaea catalyze iron-dependent anaerobic oxidation of methane

(2016) Katharina F. Ettwig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nitrate- and nitrite-dependent anaerobic oxidation of methane

(2016) Cornelia U. Welte et al.   Environmental Microbiology Reports

Metagenomic analysis of nitrogen and methane cycling in the Arabian Sea oxygen minimum zone

(2016) Claudia Lüke et al.   PeerJ

Methane oxidation coupled to nitrate reduction under hypoxia by the GammaproteobacteriumMethylomonas denitrificans, sp. nov. type strain FJG1

(2015) K. Dimitri Kits et al.   ENVIRONMENTAL MICROBIOLOGY

An overview of biogas production and utilization at full-scale wastewater treatment plants (WWTPs) in the United States: Challenges and opportunities towards energy-neutral WWTPs

(2015) Yanwen Shen et al.   RENEWABLE & SUSTAINABLE ENERGY REVIEWS

Comparative genomics of threeMethanocellalesstrains reveal novel taxonomic and metabolic features

(2015) Zhe Lyu et al.   Environmental Microbiology Reports

High resolution depth distribution of Bacteria, Archaea, methanotrophs, and methanogens in the bulk and rhizosphere soils of a flooded rice paddy

(2015) Hyo Jung Lee et al.   Frontiers in Microbiology

The archaellum: how archaea swim

(2015) Sonja-Verena Albers et al.   Frontiers in Microbiology

A Metagenomics-Based Metabolic Model of Nitrate-Dependent Anaerobic Oxidation of Methane by Methanoperedens-Like Archaea

(2015) Arslan Arshad et al.   Frontiers in Microbiology

Molecular characterization of the thioredoxin system fromMethanosarcina acetivorans

(2014) Addison C. McCarver et al.   FEBS Journal

A Long-Term Cultivation of an Anaerobic Methane-Oxidizing Microbial Community from Deep-Sea Methane-Seep Sediment Using a Continuous-Flow Bioreactor

(2014) Masataka Aoki et al.   PLoS One

Enrichment of Denitrifying Methane-Oxidizing Microorganisms Using Up-Flow Continuous Reactors and Batch Cultures

(2014) Masashi Hatamoto et al.   PLoS One

Thioredoxin targets fundamental processes in a methane-producing archaeon, Methanocaldococcus jannaschii

(2014) D. Susanti et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Classification of pmoA amplicon pyrosequences using BLAST and the lowest common ancestor method in MEGAN

(2014) Marc G. Dumont et al.   Frontiers in Microbiology

Nitrogen Removal by a Nitritation-Anammox Bioreactor at Low Temperature

(2013) Ziye Hu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage

(2013) Mohamed F. Haroon et al.   NATURE

Highly efficient methane biocatalysis revealed in a methanotrophic bacterium

(2013) M. G. Kalyuzhnaya et al.   Nature Communications

Methanogens at the top of the world: occurrence and potential activity of methanogens in newly deglaciated soils in high-altitude cold deserts in the Western Himalayas

(2013) Katrin Aschenbach et al.   Frontiers in Microbiology

Anaerobic Oxidization of Methane in a Minerotrophic Peatland: Enrichment of Nitrite-Dependent Methane-Oxidizing Bacteria

(2012) Baoli Zhu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

(2012) Elmar Pruesse et al.   BIOINFORMATICS

Effect of oxygen on the anaerobic methanotroph ‘Candidatus Methylomirabilis oxyfera’: kinetic and transcriptional analysis

(2012) Francisca A. Luesken et al.   ENVIRONMENTAL MICROBIOLOGY

Methanotrophic bacteria in oilsands tailings ponds of northern Alberta

(2012) Alireza Saidi-Mehrabad et al.   ISME Journal

Enrichment of denitrifying methanotrophic bacteria for application after direct low-temperature anaerobic sewage treatment

(2012) Christel Kampman et al.   JOURNAL OF HAZARDOUS MATERIALS

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Microbial and Chemical Characterization of Underwater Fresh Water Springs in the Dead Sea

(2012) Danny Ionescu et al.   PLoS One

Abundance and distribution of diverse membrane-bound monooxygenase (Cu-MMO) genes within the Costa Rica oxygen minimum zone

(2012) Patricia L. Tavormina et al.   Environmental Microbiology Reports

Anaerobic Oxidation of Methane in Sediments of Lake Constance, an Oligotrophic Freshwater Lake

(2011) Jörg S. Deutzmann et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Simultaneous Nitrite-Dependent Anaerobic Methane and Ammonium Oxidation Processes

(2011) Francisca A. Luesken et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Diversity and enrichment of nitrite-dependent anaerobic methane oxidizing bacteria from wastewater sludge

(2011) Francisca A. Luesken et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Interactive metagenomic visualization in a Web browser

(2011) Brian D Ondov et al.   BMC BIOINFORMATICS

An oxygen reduction chain in the hyperthermophilic anaerobe Thermotoga maritima highlights horizontal gene transfer between Thermococcales and Thermotogales

(2011) Céline Le Fourn et al.   ENVIRONMENTAL MICROBIOLOGY

Integrative analysis of environmental sequences using MEGAN4

(2011) D. H. Huson et al.   GENOME RESEARCH

Methylomonas koyamae sp. nov., a type I methane-oxidizing bacterium from floodwater of a rice paddy field

(2011) T. Ogiso et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Methanogenic archaea are globally ubiquitous in aerated soils and become active under wet anoxic conditions

(2011) Roey Angel et al.   ISME Journal

Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw

(2011) Rachel Mackelprang et al.   NATURE

Activation of Methanogenesis in Arid Biological Soil Crusts Despite the Presence of Oxygen

(2011) Roey Angel et al.   PLoS One

Structural Insight into Methyl-Coenzyme M Reductase Chemistry Using Coenzyme B Analogues,

(2010) Peder E. Cedervall et al.   BIOCHEMISTRY

Molecular analysis of high-affinity methane-oxidizing enrichment cultures isolated from a forest biocenosis and agrocenoses

(2010) I. K. Kravchenko et al.   MICROBIOLOGY

Nitrite-driven anaerobic methane oxidation by oxygenic bacteria

(2010) Katharina F. Ettwig et al.   NATURE

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

EnvDB, a database for describing the environmental distribution of prokaryotic taxa

(2009) Miguel Pignatelli et al.   Environmental Microbiology Reports

Enrichment of denitrifying anaerobic methane oxidizing microorganisms

(2009) Shihu Hu et al.   Environmental Microbiology Reports

Responses of methanogenic archaeal community to oxygen exposure in rice field soil

(2009) Yanli Yuan et al.   Environmental Microbiology Reports

Denitrifying bacteria anaerobically oxidize methane in the absence ofArchaea

(2008) Katharina F. Ettwig et al.   ENVIRONMENTAL MICROBIOLOGY