Nitrogen Metabolism Genes from Temperate Marine Sediments

Highly diverse nirK genes comprise two major clades that harbour ammonium-producing denitrifiers

(2016) Decleyre Helen et al.   BMC GENOMICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Differential contributions of archaeal ammonia oxidizer ecotypes to nitrification in coastal surface waters

(2014) Jason M Smith et al.   ISME Journal

Spatiotemporal Relationships Between the Abundance, Distribution, and Potential Activities of Ammonia-Oxidizing and Denitrifying Microorganisms in Intertidal Sediments

(2014) Jason M. Smith et al.   MICROBIAL ECOLOGY

The microbial nitrogen cycling potential is impacted by polyaromatic hydrocarbon pollution of marine sediments

(2014) Nicole M. Scott et al.   Frontiers in Microbiology

Stark Contrast in Denitrification and Anammox across the Deep Norwegian Trench in the Skagerrak

(2013) Mark Trimmer et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Predicting microbial nitrate reduction pathways in coastal sediments

(2013) CK Algar et al.   AQUATIC MICROBIAL ECOLOGY

Sulfide oxidation, nitrate respiration, carbon acquisition, and electron transport pathways suggested by the draft genome of a single orange Guaymas Basin Beggiatoa (Cand. Maribeggiatoa) sp. filament

(2013) Barbara J. MacGregor et al.   Marine Genomics

Capacity for nitrate respiration as a new aspect of metabolism of the filamentous sulfur bacteria of the genus Thiothrix

(2013) I. V. Trubitsyn et al.   MICROBIOLOGY

The Importance of Dissimilatory Nitrate Reduction to Ammonium (DNRA) in the Nitrogen Cycle of Coastal Ecosystems

(2013) Anne Giblin et al.   OCEANOGRAPHY

A Metagenomics Transect into the Deepest Point of the Baltic Sea Reveals Clear Stratification of Microbial Functional Capacities

(2013) Petter Thureborn et al.   PLoS One

Impacts of bioturbation on temporal variation in bacterial and archaeal nitrogen-cycling gene abundance in coastal sediments

(2013) B. Laverock et al.   Environmental Microbiology Reports

Metagenomic analysis and metabolite profiling of deep–sea sediments from the Gulf of Mexico following the Deepwater Horizon oil spill

(2013) Nikole E. Kimes et al.   Frontiers in Microbiology

Physiology and Diversity of Ammonia-Oxidizing Archaea

(2012) David A. Stahl et al.   Annual Review of Microbiology

Nitrous oxide reductase

(2012) Sofia R. Pauleta et al.   COORDINATION CHEMISTRY REVIEWS

Nitrous oxide production and consumption: regulation of gene expression by gas-sensitive transcription factors

(2012) S. Spiro   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Microbiome of Brazilian Mangrove Sediments as Revealed by Metagenomics

(2012) Fernando Dini Andreote et al.   PLoS One

Estimation of biogeochemical rates from concentration profiles: A novel inverse method

(2011) Karsten Alexander Lettmann et al.   ESTUARINE COASTAL AND SHELF SCIENCE

Measuring unbiased metatranscriptomics in suboxic waters of the central Baltic Sea using a new in situ fixation system

(2011) Janie Feike et al.   ISME Journal

Crenarchaeol tracks winter blooms of ammonia-oxidizing Thaumarchaeota in the coastal North Sea

(2011) Angela Pitcher et al.   LIMNOLOGY AND OCEANOGRAPHY

The Effects of Salinity on Nitrogen Losses from an Oligohaline Estuarine Sediment

(2010) Anne E. Giblin et al.   Estuaries and Coasts

Relevance of a crenarchaeotal subcluster related to Candidatus Nitrosopumilus maritimus to ammonia oxidation in the suboxic zone of the central Baltic Sea

(2010) Matthias Labrenz et al.   ISME Journal

Comparative metagenomics of microbial communities inhabiting deep-sea hydrothermal vent chimneys with contrasting chemistries

(2010) Wei Xie et al.   ISME Journal

A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria

(2010) S. Lucker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea

(2010) C. B. Walker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS

Relative abundance and diversity of ammonia-oxidizing archaea and bacteria in the San Francisco Bay estuary

(2008) Annika C. Mosier et al.   ENVIRONMENTAL MICROBIOLOGY

Shifts in the relative abundance of ammonia-oxidizing bacteria and archaea across physicochemical gradients in a subterranean estuary

(2008) Alyson E. Santoro et al.   ENVIRONMENTAL MICROBIOLOGY

Diversity and spatial distribution of sediment ammonia-oxidizing crenarchaeota in response to estuarine and environmental gradients in the Changjiang Estuary and East China Sea

(2008) H. Dang et al.   MICROBIOLOGY-SGM