Adherent-Invasive E. coli: Update on the Lifestyle of a Troublemaker in Crohn’s Disease

Dietary Guidance for Patients with Inflammatory Bowel Disease from the International Organization for the Study of Inflammatory Bowel Disease

(2020) A. Levine et al.   Clinical Gastroenterology and Hepatology

Manipulating the type VI secretion system spike to shuttle passenger proteins

(2020) Sarah Wettstadt et al.   PLoS One

Propionic Acid Promotes the Virulent Phenotype of Crohn’s Disease-Associated Adherent-Invasive Escherichia coli

(2020) Michael J. Ormsby et al.   Cell Reports

Enhanced O-linked Glcnacylation in Crohn's disease promotes intestinal inflammation

(2020) Qian-Hui Sun et al.   EBioMedicine

Study of a classification algorithm for AIEC identification in geographically distinct E. coli strains

(2020) Carla Camprubí-Font et al.   Scientific Reports

Emerging Role of Exosomes in Diagnosis and Treatment of Infectious and Inflammatory Bowel Diseases

(2020) Anaïs Larabi et al.   Cells

Resveratrol-Induced Xenophagy Promotes Intracellular Bacteria Clearance in Intestinal Epithelial Cells and Macrophages

(2019) Jana Al Azzaz et al.   Frontiers in Immunology

Crohn’s Disease-Associated Adherent-Invasive Escherichia coli Manipulate Host Autophagy by Impairing SUMOylation

(2019) Guillaume Dalmasso et al.   Cells

Flagellin-mediated activation of IL-33-ST2 signaling by a pathobiont promotes intestinal fibrosis

(2019) Jin Imai et al.   Mucosal Immunology

The Inflammatory Bowel Disease Drug Azathioprine Induces Autophagy via mTORC1 and the Unfolded Protein Response Sensor PERK

(2019) Kirsty M Hooper et al.   INFLAMMATORY BOWEL DISEASES

Host-Specific Adaptive Diversification of Crohn’s Disease-Associated Adherent-Invasive Escherichia coli

(2019) Wael Elhenawy et al.   Cell Host & Microbe

Prominence of ileal mucosa-associated microbiota to predict postoperative endoscopic recurrence in Crohn’s disease

(2019) Harry Sokol et al.   GUT

Differential miRNA expression in ileal and colonic tissues reveals an altered immunoregulatory molecular profile in individuals with Crohn’s disease versus healthy subjects

(2019) Aylia Mohammadi et al.   Journal of Crohns & Colitis

Inflammation associated ethanolamine facilitates infection by Crohn's disease-linked adherent-invasive Escherichia coli

(2019) Michael J. Ormsby et al.   EBioMedicine

Flagella-Driven Motility of Bacteria

(2019) Shuichi Nakamura et al.   Biomolecules

Conjugative delivery of CRISPR-Cas9 for the selective depletion of antibiotic-resistant enterococci

(2019) Marinelle Rodrigues et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Yersiniabactin producing AIEC promote inflammation-associated fibrosis in gnotobiotic Il10-/- mice

(2019) Melissa Ellermann et al.   INFECTION AND IMMUNITY

Enhanced E. coli LF82 translocation through follicle-associated epithelium in Crohn’s disease is dependent on long polar fimbriae and CEACAM6-expression, and increases paracellular permeability

(2019) Åsa V Keita et al.   Journal of Crohns & Colitis

Inflammatory bowel disease - glycomics perspective

(2019) Maja Hanić et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

Efficient inter-species conjugative transfer of a CRISPR nuclease for targeted bacterial killing

(2019) Thomas A. Hamilton et al.   Nature Communications

The Crohn’s disease-associated Escherichia coli strain LF82 relies on SOS and stringent responses to survive, multiply and tolerate antibiotics within macrophages

(2019) Gaëlle Demarre et al.   PLoS Pathogens

Dietary l-serine confers a competitive fitness advantage to Enterobacteriaceae in the inflamed gut

(2019) Sho Kitamoto et al.   Nature Microbiology

Macrophages Inability to Mediate Adherent-Invasive E. coli Replication is Linked to Autophagy in Crohn’s Disease Patients

(2019) Buisson et al.   Cells

Flagellin-elicited adaptive immunity suppresses flagellated microbiota and vaccinates against chronic inflammatory diseases

(2019) Hao Q. Tran et al.   Nature Communications

Growth Control of Adherent-Invasive Escherichia coli (AIEC) by the Predator Bacteria Bdellovibrio bacteriovorus: A New Therapeutic Approach for Crohn’s Disease Patients

(2019) Giulia Bonfiglio et al.   Microorganisms

Rifaximin decreases virulence of Crohn’s disease-associated Escherichia coli and epithelial inflammatory responses

(2018) Belgin Dogan et al.   JOURNAL OF ANTIBIOTICS

Mice harboring pathobiont-free microbiota do not develop intestinal inflammation that normally results from an innate immune deficiency

(2018) Benoit Chassaing et al.   PLoS One

Antibacterial Weapons: Targeted Destruction in the Microbiota

(2018) Benoit Chassaing et al.   TRENDS IN MICROBIOLOGY

Comparative genomics reveals new single-nucleotide polymorphisms that can assist in identification of adherent-invasive Escherichia coli

(2018) Carla Camprubí-Font et al.   Scientific Reports

Oligomannose-Rich Membranes of Dying Intestinal Epithelial Cells Promote Host Colonization by Adherent-Invasive E. coli

(2018) Tetiana Dumych et al.   Frontiers in Microbiology

Let-7b ameliorates Crohn’s disease-associated adherent-invasive E coli induced intestinal inflammation via modulating Toll-Like Receptor 4 expression in intestinal epithelial cells

(2018) Zhen Guo et al.   BIOCHEMICAL PHARMACOLOGY

AIEC infection triggers modification of gut microbiota composition in genetically predisposed mice, contributing to intestinal inflammation

(2018) Alexis Bretin et al.   Scientific Reports

Murine Adherent and Invasive E. coli Induces Chronic Inflammation and Immune Responses in the Small and Large Intestines of Monoassociated IL-10-/- Mice Independent of Long Polar Fimbriae Adhesin A

(2018) Julia M Schmitz et al.   INFLAMMATORY BOWEL DISEASES

Mechanisms, Management, and Treatment of Fibrosis in Patients With Inflammatory Bowel Diseases

(2017) Florian Rieder et al.   GASTROENTEROLOGY

Adherent-invasiveEscherichia coliin inflammatory bowel disease

(2017) Carolina Palmela et al.   GUT

Dietary emulsifiers directly alter human microbiota composition and gene expression ex vivo potentiating intestinal inflammation

(2017) Benoit Chassaing et al.   GUT

Bacteriophages targeting adherent invasive Escherichia coli strains as a promising new treatment for Crohn's disease

(2017) Matthieu Galtier et al.   Journal of Crohns & Colitis

Crohn's disease

(2017) Joana Torres et al.   LANCET

IgA-coatedE. colienriched in Crohn’s disease spondyloarthritis promote TH17-dependent inflammation

(2017) Monica Viladomiu et al.   Science Translational Medicine

Interactions of Intestinal Bacteria with Components of the Intestinal Mucus

(2017) Jean-Félix Sicard et al.   Frontiers in Cellular and Infection Microbiology

Gp96 Peptide Antagonist gp96-II Confers Therapeutic Effects in Murine Intestinal Inflammation

(2017) Claudia A. Nold-Petry et al.   Frontiers in Immunology

Activation of the EIF2AK4-EIF2A/eIF2α-ATF4 pathway triggers autophagy response to Crohn disease-associated adherent-invasiveEscherichia coliinfection

(2016) Alexis Bretin et al.   Autophagy

The Antiadhesive Strategy in Crohn′s Disease: Orally Active Mannosides to Decolonize PathogenicEscherichia colifrom the Gut

(2016) Dimitri Alvarez Dorta et al.   CHEMBIOCHEM

Strain competition restricts colonization of an enteric pathogen and prevents colitis

(2016) Aaron L Hecht et al.   EMBO REPORTS

Bacteriophages to reduce gut carriage of antibiotic resistant uropathogens with low impact on microbiota composition

(2016) Matthieu Galtier et al.   ENVIRONMENTAL MICROBIOLOGY

Comparative genomics of Crohn's disease-associated adherent-invasive Escherichia coli

(2016) Claire L O'Brien et al.   GUT

NOD2 induces autophagy to control AIEC bacteria infectiveness in intestinal epithelial cells

(2016) Anna Negroni et al.   INFLAMMATION RESEARCH

GipA Factor Supports Colonization of Peyerʼs Patches by Crohnʼs Disease-associated Escherichia Coli

(2016) Emilie Vazeille et al.   INFLAMMATORY BOWEL DISEASES

Exosomes Released from Cells Infected with Crohnʼs Disease–associated Adherent-Invasive Escherichia coli Activate Host Innate Immune Responses and Enhance Bacterial Intracellular Replication

(2016) Jessica Carrière et al.   INFLAMMATORY BOWEL DISEASES

An overview of the bacterial contribution to Crohn disease pathogenesis

(2016) Moftah H. Alhagamhmad et al.   JOURNAL OF MEDICAL MICROBIOLOGY

The Densely O-Glycosylated MUC2 Mucin Protects the Intestine and Provides Food for the Commensal Bacteria

(2016) Liisa Arike et al.   JOURNAL OF MOLECULAR BIOLOGY

Use of Escherichia coli Nissle 1917 producing recombinant colicins for treatment of IBD patients

(2016) Roman Kotłowski   MEDICAL HYPOTHESES

Second generation of thiazolylmannosides, FimH antagonists for E. coli-induced Crohn's disease

(2016) T. Chalopin et al.   ORGANIC & BIOMOLECULAR CHEMISTRY

Bacteroides fragilistype VI secretion systems use novel effector and immunity proteins to antagonize human gut Bacteroidales species

(2016) Maria Chatzidaki-Livanis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SalmonellaTyphimurium utilizes a T6SS-mediated antibacterial weapon to establish in the host gut

(2016) Thibault G. Sana et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Aim, Load, Fire: The Type VI Secretion System, a Bacterial Nanoweapon

(2016) Francesca R. Cianfanelli et al.   TRENDS IN MICROBIOLOGY

Role of antibiotics for treatment of inflammatory bowel disease

(2016) Orna Nitzan   WORLD JOURNAL OF GASTROENTEROLOGY

Acute Infectious Gastroenteritis Potentiates a Crohn's Disease Pathobiont to Fuel Ongoing Inflammation in the Post-Infectious Period

(2016) Cherrie L. Small et al.   PLoS Pathogens

Oral Phage Therapy of Acute Bacterial Diarrhea With Two Coliphage Preparations: A Randomized Trial in Children From Bangladesh

(2016) Shafiqul Alam Sarker et al.   EBioMedicine

Arabinoxylans, inulin and Lactobacillus reuteri 1063 repress the adherent-invasive Escherichia coli from mucus in a mucosa-comprising gut model

(2016) Pieter Van den Abbeele et al.   npj Biofilms and Microbiomes

Western diet induces a shift in microbiota composition enhancing susceptibility to Adherent-Invasive E. coli infection and intestinal inflammation.

(2016) Allison Agus et al.   Scientific Reports

Glycopolymers as Antiadhesives of E. coli Strains Inducing Inflammatory Bowel Diseases

(2015) Xibo Yan et al.   BIOMACROMOLECULES

The Vat-AIEC protease promotes crossing of the intestinal mucus layer by Crohn's disease-associatedEscherichia coli

(2015) Lucie Gibold et al.   CELLULAR MICROBIOLOGY

The Altered Schaedler Flora: Continued Applications of a Defined Murine Microbial Community

(2015) Meghan Wymore Brand et al.   ILAR JOURNAL

The NAIP-NLRC4 inflammasome in innate immune detection of bacterial flagellin and type III secretion apparatus

(2015) Yue Zhao et al.   IMMUNOLOGICAL REVIEWS

The IbeA Invasin of Adherent-Invasive Escherichia coli Mediates Interaction with Intestinal Epithelia and Macrophages

(2015) Roberto J. Cieza et al.   INFECTION AND IMMUNITY

Saccharomyces cerevisiae CNCM I-3856 Prevents Colitis Induced by AIEC Bacteria in the Transgenic Mouse Model Mimicking Crohnʼs Disease

(2015) Adeline Sivignon et al.   INFLAMMATORY BOWEL DISEASES

Activity of Species-specific Antibiotics Against Crohnʼs Disease–Associated Adherent-invasive Escherichia coli

(2015) Carla L. Brown et al.   INFLAMMATORY BOWEL DISEASES

Escherichia coli LF82 Differentially Regulates ROS Production and Mucin Expression in Intestinal Epithelial T84 Cells

(2015) Imen Elatrech et al.   INFLAMMATORY BOWEL DISEASES

Vitamin D Deficiency Predisposes to Adherent-invasive Escherichia coli-induced Barrier Dysfunction and Experimental Colonic Injury

(2015) Amit Assa et al.   INFLAMMATORY BOWEL DISEASES

Monocyte-derived Macrophages from Crohn's Disease Patients Are Impaired in the Ability to Control Intracellular Adherent-Invasive Escherichia coli and Exhibit Disordered Cytokine Secretion Profile

(2015) E. Vazeille et al.   Journal of Crohns & Colitis

Defective macrophage handling ofEscherichia coliin Crohn's disease

(2015) TR Elliott et al.   JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY

Intestinal Permeability in Inflammatory Bowel Disease: Pathogenesis, Clinical Evaluation, and Therapy of Leaky Gut

(2015) Andrea Michielan et al.   MEDIATORS OF INFLAMMATION

Dietary emulsifiers impact the mouse gut microbiota promoting colitis and metabolic syndrome

(2015) Benoit Chassaing et al.   NATURE

Exosomes and their roles in immune regulation and cancer

(2015) David W. Greening et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Development of Heptylmannoside-Based Glycoconjugate Antiadhesive Compounds against Adherent-Invasive Escherichia coli Bacteria Associated with Crohn's Disease

(2015) A. Sivignon et al.   mBio

Shigella Infection Interferes with SUMOylation and Increases PML-NB Number

(2015) Saima M. Sidik et al.   PLoS One

Sumoylation controls host anti-bacterial response to the gut invasive pathogen Shigella flexneri

(2014) S. Fritah et al.   EMBO REPORTS

Diet-induced hypoxia responsive element demethylation increases CEACAM6 expression, favouring Crohn's disease-associatedEscherichia colicolonisation

(2014) Jérémy Denizot et al.   GUT

Host Defense Peptide Resistance Contributes to Colonization and Maximal Intestinal Pathology by Crohn's Disease-Associated Adherent-Invasive Escherichia coli

(2014) Joseph B. McPhee et al.   INFECTION AND IMMUNITY

Gut Microbiota and Inflammatory Bowel Disease: The Role of Antibiotics in Disease Management

(2014) David H. Kerman et al.   POSTGRADUATE MEDICINE

Characterization of virus-like particles associated with the human faecal and caecal microbiota

(2014) Lesley Hoyles et al.   RESEARCH IN MICROBIOLOGY

“Small Talk” in the Innate Immune System via RNA-Containing Extracellular Vesicles

(2014) Susanne G. van der Grein et al.   Frontiers in Immunology

Sumoylation: A Regulatory Protein Modification in Health and Disease

(2013) Annette Flotho et al.   Annual Review of Biochemistry

Chitin-Binding Domains of Escherichia Coli ChiA Mediate Interactions With Intestinal Epithelial Cells in Mice With Colitis

(2013) Daren Low et al.   GASTROENTEROLOGY

Crohn's Disease–Associated Adherent Invasive Escherichia coli Modulate Levels of microRNAs in Intestinal Epithelial Cells to Reduce Autophagy

(2013) Hang Thi Thu Nguyen et al.   GASTROENTEROLOGY

MIR106B and MIR93 Prevent Removal of Bacteria From Epithelial Cells by Disrupting ATG16L1-Mediated Autophagy

(2013) Changming Lu et al.   GASTROENTEROLOGY

Western diet induces dysbiosis with increasedE coliin CEABAC10 mice,alters host barrier function favouring AIEC colonisation

(2013) Margarita Martinez-Medina et al.   GUT

AIEC pathobiont instigates chronic colitis in susceptible hosts by altering microbiota composition

(2013) Benoit Chassaing et al.   GUT

The Role of Macrophages and Dendritic Cells in the Initiation of Inflammation in IBD

(2013) Erin C. Steinbach et al.   INFLAMMATORY BOWEL DISEASES

Thiazolylaminomannosides As Potent Antiadhesives of Type 1 Piliated Escherichia coli Isolated from Crohn’s Disease Patients

(2013) Sami Brument et al.   JOURNAL OF MEDICINAL CHEMISTRY

The intestinal fatty acid propionate inhibitsSalmonellainvasion through the post-translational control of HilD

(2013) Chien-Che Hung et al.   MOLECULAR MICROBIOLOGY

Correction: Higher Prevalence and Abundance of Bdellovibrio bacteriovorus in the Human Gut of Healthy Subjects

(2013) Valerio Iebba et al.   PLoS One

Role of microRNAs in the immune system, inflammation and cancer

(2013) Jennifer Raisch   WORLD JOURNAL OF GASTROENTEROLOGY

Mucosal Barrier in Ulcerative Colitis and Crohn’s Disease

(2013) A. E. Dorofeyev et al.   Gastroenterology Research and Practice

Persistent infection with Crohn’s disease-associated adherent-invasive Escherichia coli leads to chronic inflammation and intestinal fibrosis

(2013) Cherrie-Lee N. Small et al.   Nature Communications

Point Mutations in FimH Adhesin of Crohn's Disease-Associated Adherent-Invasive Escherichia coli Enhance Intestinal Inflammatory Response

(2013) Nicolas Dreux et al.   PLoS Pathogens

A role for vimentin in Crohn disease

(2012) Paul Henderson et al.   Autophagy

Transient Inability to Manage Proteobacteria Promotes Chronic Gut Inflammation in TLR5-Deficient Mice

(2012) Frederic A. Carvalho et al.   Cell Host & Microbe

Defects in autophagy favour adherent-invasive Escherichia coli persistence within macrophages leading to increased pro-inflammatory response

(2012) Pierre Lapaquette et al.   CELLULAR MICROBIOLOGY

Bile salts induce long polar fimbriae expression favouring Crohn's disease-associated adherent-invasiveEscherichia coliinteraction with Peyer's patches

(2012) Benoit Chassaing et al.   ENVIRONMENTAL MICROBIOLOGY

Connecting dysbiosis, bile-acid dysmetabolism and gut inflammation in inflammatory bowel diseases

(2012) Henri Duboc et al.   GUT

The intermediate filament protein, vimentin, is a regulator of NOD2 activity

(2012) Craig Stevens et al.   GUT

Multidrug Resistance Is Common in Escherichia coli Associated with Ileal Crohnʼs Disease

(2012) Belgin Dogan et al.   INFLAMMATORY BOWEL DISEASES

Decreased abundance ofFaecalibacterium prausnitziiin the gut microbiota of Crohn's disease

(2012) Takehide Fujimoto et al.   JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY

Crohn's Disease-Associated Adherent-Invasive Escherichia coli Adhesion Is Enhanced by Exposure to the Ubiquitous Dietary Polysaccharide Maltodextrin

(2012) Kourtney P. Nickerson et al.   PLoS One

The Role of Autophagy in Crohn’s Disease

(2012) Paul Henderson et al.   Cells

Chitinase 3-Like-1 Expression in Colonic Epithelial Cells as a Potentially Novel Marker for Colitis-Associated Neoplasia

(2011) Chun-Chuan Chen et al.   AMERICAN JOURNAL OF PATHOLOGY

High-throughput clone library analysis of the mucosa-associated microbiota reveals dysbiosis and differences between inflamed and non-inflamed regions of the intestine in inflammatory bowel disease

(2011) Alan W Walker et al.   BMC MICROBIOLOGY

Cellular Infiltration and Cytokine Expression Correlate with Fistulizing State in Crohn's Disease

(2011) Saleh A. Naser et al.   Clinical and Vaccine Immunology

Analysis of Escherichia coli Isolated from Patients Affected by Crohn’s Disease

(2011) Tiziana Raso et al.   CURRENT MICROBIOLOGY

Adherent-Invasive Escherichia coli Induce Claudin-2 Expression and Barrier Defect in CEABAC10 Mice and Crohnʼs Disease Patients§

(2011) Jeremy Denizot et al.   INFLAMMATORY BOWEL DISEASES

Crohn disease–associated adherent-invasive E. coli bacteria target mouse and human Peyer’s patches via long polar fimbriae

(2011) Benoit Chassaing et al.   JOURNAL OF CLINICAL INVESTIGATION

Replication of Crohn's disease-associated AIEC within macrophages is dependent on TNF-α secretion

(2011) Marie-Agnès Bringer et al.   LABORATORY INVESTIGATION

A synonymous variant in IRGM alters a binding site for miR-196 and causes deregulation of IRGM-dependent xenophagy in Crohn's disease

(2011) Patrick Brest et al.   NATURE GENETICS

Paneth cells, antimicrobial peptides and maintenance of intestinal homeostasis

(2011) Charles L. Bevins et al.   NATURE REVIEWS MICROBIOLOGY

Role of Meprins to Protect Ileal Mucosa of Crohn's Disease Patients from Colonization by Adherent-Invasive E. coli

(2011) Emilie Vazeille et al.   PLoS One

Mucolytic Bacteria With Increased Prevalence in IBD Mucosa Augment In Vitro Utilization of Mucin by Other Bacteria

(2010) Chin Wen Png et al.   AMERICAN JOURNAL OF GASTROENTEROLOGY

ATG16L1 and NOD2 Interact in an Autophagy-Dependent Antibacterial Pathway Implicated in Crohn's Disease Pathogenesis

(2010) Craig R. Homer et al.   GASTROENTEROLOGY

Abnormally expressed ER stress response chaperone Gp96 in CD favours adherent-invasive Escherichia coli invasion

(2010) N. Rolhion et al.   GUT

Characterization of Escherichia coli isolated from gut biopsies of newly diagnosed patients with inflammatory bowel disease

(2010) Shadi Sepehri et al.   INFLAMMATORY BOWEL DISEASES

Autophagy: cellular and molecular mechanisms

(2010) Danielle Glick et al.   JOURNAL OF PATHOLOGY

Listeria monocytogenes impairs SUMOylation for efficient infection

(2010) David Ribet et al.   NATURE

Viruses in the faecal microbiota of monozygotic twins and their mothers

(2010) Alejandro Reyes et al.   NATURE

Identification of Restricted Subsets of Mature microRNA Abnormally Expressed in Inactive Colonic Mucosa of Patients with Inflammatory Bowel Disease

(2010) Magali Fasseu et al.   PLoS One

Abnormal CEACAM6 expression in Crohn disease patients favors gut colonization and inflammation by Adherent-InvasiveE. coli

(2010) Nicolas Barnich et al.   Virulence

Adherent-invasive Escherichia coli, strain LF82 disrupts apical junctional complexes in polarized epithelia

(2009) Eytan Wine et al.   BMC MICROBIOLOGY

Crohn's disease-associated adherent-invasiveE. coliare selectively favoured by impaired autophagy to replicate intracellularly

(2009) Pierre Lapaquette et al.   CELLULAR MICROBIOLOGY

Molecular diversity of Escherichia coli in the human gut: New ecological evidence supporting the role of adherent-invasive E. coli (AIEC) in Crohnʼs disease

(2009) Margarita Martinez-Medina et al.   INFLAMMATORY BOWEL DISEASES

Role of diet in the development of inflammatory bowel disease

(2009) Christine A. Chapman-Kiddell et al.   INFLAMMATORY BOWEL DISEASES

Crohn's disease adherent-invasiveEscherichia colicolonize and induce strong gut inflammation in transgenic mice expressing human CEACAM

(2009) Frédéric A. Carvalho et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Uptake through glycoprotein 2 of FimH+ bacteria by M cells initiates mucosal immune response

(2009) Koji Hase et al.   NATURE

Nod1 and Nod2 direct autophagy by recruiting ATG16L1 to the plasma membrane at the site of bacterial entry

(2009) Leonardo H Travassos et al.   NATURE IMMUNOLOGY

Tn-seq: high-throughput parallel sequencing for fitness and genetic interaction studies in microorganisms

(2009) Tim van Opijnen et al.   NATURE METHODS

Crohnʼs disease-associated Escherichia coli LF82 aggravates colitis in injured mouse colon via signaling by flagellin

(2008) Frédéric A. Carvalho et al.   INFLAMMATORY BOWEL DISEASES

Thickness and continuity of the adherent colonic mucus barrier in active and quiescent ulcerative colitis and Crohn’s disease

(2008) V. Strugala et al.   INTERNATIONAL JOURNAL OF CLINICAL PRACTICE