Transcriptome and Phytochemical Analyses Provide New Insights Into Long Non-Coding RNAs Modulating Characteristic Secondary Metabolites of Oolong Tea (Camellia sinensis) in Solar-Withering

Differential co-expression networks of long non-coding RNAs and mRNAs in Cleistogenes songorica under water stress and during recovery

(2019) Qi Yan et al.   BMC PLANT BIOLOGY

Tissue-specific accumulation and subcellular localization of chalcone isomerase (CHI) in grapevine

(2019) Huiling Wang et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Tomato lncRNA23468 functions as a competing endogenous RNA to modulate NBS-LRR genes by decoying miR482b in the tomato-Phytophthora infestans interaction

(2019) Ning Jiang et al.   Horticulture Research

Quantitative proteomic analysis of low linolenic acid transgenic soybean reveals perturbations of fatty acid metabolic pathways

(2019) Nazrul Islam et al.   PROTEOMICS

Evolutionary dynamics of linc RNA transcription in nine citrus species

(2019) Lili Ke et al.   PLANT JOURNAL

Tea Plant Information Archive ( TPIA ): A comprehensive genomics and bioinformatics platform for tea plant

(2019) En‐Hua Xia et al.   PLANT BIOTECHNOLOGY JOURNAL

Influence of Chloroplast Defects on Formation of Jasmonic Acid and Characteristic Aroma Compounds in Tea (Camellia sinensis) Leaves Exposed to Postharvest Stresses

(2019) Jianlong Li et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

De novo transcriptome and phytochemical analyses reveal differentially expressed genes and characteristic secondary metabolites in the original oolong tea (Camellia sinensis) cultivar ‘Tieguanyin’ compared with cultivar ‘Benshan’

(2019) Yuqiong Guo et al.   BMC GENOMICS

A Jasmonate Signaling Network Activates Root Stem Cells and Promotes Regeneration

(2019) Wenkun Zhou et al.   CELL

Transcriptomic and Metabolic Insights into the Distinctive Effects of Exogenous Melatonin and Gibberellin on Terpenoid Synthesis and Plant Hormone Signal Transduction Pathway in Camellia sinensis

(2019) Taimei Di et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Tissue specific long non-coding RNAs are involved in aroma formation of black tea

(2019) Deepti Varshney et al.   INDUSTRIAL CROPS AND PRODUCTS

Identification of Regulatory Networks of MicroRNAs and Their Targets in Response to Colletotrichum gloeosporioides in Tea Plant (Camellia sinensis L.)

(2019) Anburaj Jeyaraj et al.   Frontiers in Plant Science

Genome-wide investigation of superoxide dismutase (SOD) gene family and their regulatory miRNAs reveal the involvement in abiotic stress and hormone response in tea plant (Camellia sinensis)

(2019) Chengzhe Zhou et al.   PLoS One

Genome-wide analysis of lncRNAs in Paulownia tomentosa infected with phytoplasmas

(2018) Yabing Cao et al.   ACTA PHYSIOLOGIAE PLANTARUM

The Oxylipin Pathways: Biochemistry and Function

(2018) Claus Wasternack et al.   Annual Review of Plant Biology

Identification of Gossypium hirsutum long non-coding RNAs (lncRNAs) under salt stress

(2018) Fenni Deng et al.   BMC PLANT BIOLOGY

Transcriptomic and functional analyses unveil the role of long non-coding RNAs in anthocyanin biosynthesis during sea buckthorn fruit ripening

(2018) Guoyun Zhang et al.   DNA RESEARCH

Jasmonates in plants under abiotic stresses: Crosstalk with other phytohormones matters

(2018) Tasir S. Per et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Unraveling a crosstalk regulatory network of temporal aroma accumulation in tea plant ( Camellia sinensis ) leaves by integration of metabolomics and transcriptomics

(2018) Qingshan Xu et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Formation mechanism of the oolong tea characteristic aroma during bruising and withering treatment

(2018) Ci-Jie Hu et al.   FOOD CHEMISTRY

Influence of methyl jasmonate foliar application to vineyard on grape volatile composition over three consecutive vintages

(2018) Teresa Garde-Cerdán et al.   FOOD RESEARCH INTERNATIONAL

Identification and characterization of long non-coding RNAs involved in the formation and development of poplar adventitious roots

(2018) Sian Liu et al.   INDUSTRIAL CROPS AND PRODUCTS

Characterization and Alternative Splicing Profiles of the Lipoxygenase Gene Family in Tea Plant (Camellia sinensis)

(2018) Junyan Zhu et al.   PLANT AND CELL PHYSIOLOGY

Genome-wide identification and characterization of mRNAs and lncRNAs involved in cold stress in the wild banana (Musa itinerans)

(2018) Weihua Liu et al.   PLoS One

Draft genome sequence ofCamellia sinensisvar.sinensisprovides insights into the evolution of the tea genome and tea quality

(2018) Chaoling Wei et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide identification and characterization of novel lncRNAs in Ginkgo biloba

(2018) Li Wang et al.   TREES-STRUCTURE AND FUNCTION

Full-length transcriptome sequences and the identification of putative genes for flavonoid biosynthesis in safflower

(2018) Jiang Chen et al.   BMC GENOMICS

De novo transcriptome combined with spectrophotometry and gas chromatography-mass spectrometer (GC-MS) reveals differentially expressed genes during accumulation of secondary metabolites in purple-leaf tea (Camellia sinensis cv Hongyafoshou)

(2018) Yuqiong Guo et al.   JOURNAL OF HORTICULTURAL SCIENCE & BIOTECHNOLOGY

Identification of genes revealed differential expression profiles and lignin accumulation during leaf and stem development in tea plant (Camellia sinensis (L.) O. Kuntze)

(2018) Yong-Xin Wang et al.   PROTOPLASMA

Overexpressing lncRNA LAIR increases grain yield and regulates neighbouring gene cluster expression in rice

(2018) Ying Wang et al.   Nature Communications

Genome-wide identification and characterization of long non-coding RNAs involved in the early somatic embryogenesis in Dimocarpus longan Lour

(2018) Yan Chen et al.   BMC GENOMICS

Novel insight into the role of withering process in characteristic flavor formation of teas using transcriptome analysis and metabolite profiling

(2018) Yu Wang et al.   FOOD CHEMISTRY

Impact of Six Typical Processing Methods on the Chemical Composition of Tea Leaves Using a Single Camellia sinensis Cultivar, Longjing 43

(2018) Yijun Wang et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Revealing of MicroRNA Involved Regulatory Gene Networks on Terpenoid Biosynthesis in Camellia sinensis in Different Growing Time Points

(2018) Shiqi Zhao et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

The Pfam protein families database in 2019

(2018) Sara El-Gebali et al.   NUCLEIC ACIDS RESEARCH

Identification of novel lncRNAs in Eucalyptus grandis

(2018) Zheng Lin et al.   INDUSTRIAL CROPS AND PRODUCTS

Formation of ( E )-nerolidol in tea ( Camellia sinensis ) leaves exposed to multiple stresses during tea manufacturing

(2017) Ying Zhou et al.   FOOD CHEMISTRY

Regulation of Anthocyanin Biosynthesis in Purple Leaves of Zijuan Tea (Camellia sinensis var. kitamura)

(2017) Lingxia Wang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The Tea Tree Genome Provides Insights into Tea Flavor and Independent Evolution of Caffeine Biosynthesis

(2017) En-Hua Xia et al.   Molecular Plant

Volatiles Emitted at Different Flowering Stages of Jasminum sambac and Expression of Genes Related to α-Farnesene Biosynthesis

(2017) Ying Yu et al.   MOLECULES

Jasmonates are signals in the biosynthesis of secondary metabolites — Pathways, transcription factors and applied aspects — A brief review

(2017) Claus Wasternack et al.   New Biotechnology

α-Farnesene and ocimene induce metabolite changes by volatile signaling in neighboring tea ( Camellia sinensis ) plants

(2017) Lanting Zeng et al.   PLANT SCIENCE

Long noncoding RNAs in the model species Brachypodium distachyon

(2017) Concetta De Quattro et al.   Scientific Reports

Constructing Integrated Networks for Identifying New Secondary Metabolic Pathway Regulators in Grapevine: Recent Applications and Future Opportunities

(2017) Darren C. J. Wong et al.   Frontiers in Plant Science

Molecular Link between Leaf Coloration and Gene Expression of Flavonoid and Carotenoid Biosynthesis in Camellia sinensis Cultivar ‘Huangjinya’

(2017) Lubin Song et al.   Frontiers in Plant Science

A long noncoding RNA involved in rice reproductive development by negatively regulating osa-miR160

(2017) Meng Wang et al.   Science Bulletin

Genome-wide identification and functional prediction of cold and/or drought-responsive lncRNAs in cassava

(2017) Shuxia Li et al.   Scientific Reports

Systematic characterization of novel lncRNAs responding to phosphate starvation in Arabidopsis thaliana

(2016) Jiapei Yuan et al.   BMC GENOMICS

Green tea flavour determinants and their changes over manufacturing processes

(2016) Zhuo-Xiao Han et al.   FOOD CHEMISTRY

Exploring drought stress-regulated genes in senna (Cassia angustifolia Vahl.): a transcriptomic approach

(2016) Rucha Harishbhai Mehta et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Formation of Volatile Tea Constituent Indole During the Oolong Tea Manufacturing Process

(2016) Lanting Zeng et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Recent Advances in Volatiles of Teas

(2016) Xin-Qiang Zheng et al.   MOLECULES

Long Noncoding RNA Identification: Comparing Machine Learning Based Tools for Long Noncoding Transcripts Discrimination

(2016) Siyu Han et al.   Biomed Research International

Comprehensive Transcriptome Profiling Reveals Long Noncoding RNA Expression and Alternative Splicing Regulation during Fruit Development and Ripening in Kiwifruit (Actinidia chinensis)

(2016) Wei Tang et al.   Frontiers in Plant Science

Retention and Molecular Evolution of Lipoxygenase Genes in Modern Rosid Plants

(2016) Zhu Chen et al.   Frontiers in Genetics

Monitoring volatile compound profiles and chemical compositions during the process of manufacturing semi-fermented oolong tea

(2016) S. Y. Lin et al.   JOURNAL OF HORTICULTURAL SCIENCE & BIOTECHNOLOGY

Transcriptional responses and flavor volatiles biosynthesis in methyl jasmonate-treated tea leaves

(2015) Jiang Shi et al.   BMC PLANT BIOLOGY

Transcriptomic and phytochemical analysis of the biosynthesis of characteristic constituents in tea (Camellia sinensis) compared with oil tea (Camellia oleifera)

(2015) Yuling Tai et al.   BMC PLANT BIOLOGY

Long non-coding RNAs and their functions in plants

(2015) Julia A Chekanova   CURRENT OPINION IN PLANT BIOLOGY

Effect of grape bunch sunlight exposure and UV radiation on phenolics and volatile composition of Vitis vinifera L. cv. Pinot noir wine

(2015) Jianqiang Song et al.   FOOD CHEMISTRY

Does Enzymatic Hydrolysis of Glycosidically Bound Volatile Compounds Really Contribute to the Formation of Volatile Compounds During the Oolong Tea Manufacturing Process?

(2015) Jiadong Gui et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

RNA sequencing and functional analysis implicate the regulatory role of long non-coding RNAs in tomato fruit ripening

(2015) Benzhong Zhu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Exploiting SNPs for biallelic CRISPR mutations in the outcrossing woody perennialPopulusreveals 4-coumarate:CoA ligase specificity and redundancy

(2015) Xiaohong Zhou et al.   NEW PHYTOLOGIST

Cloning and functional characterization of a 4-coumarate CoA ligase from liverwort Plagiochasma appendiculatum

(2015) Shuai Gao et al.   PHYTOCHEMISTRY

Regulation of Nicotine Biosynthesis by an Endogenous Target Mimicry of MicroRNA in Tobacco

(2015) Fangfang Li et al.   PLANT PHYSIOLOGY

Diverse roles of jasmonates and ethylene in abiotic stress tolerance

(2015) Kemal Kazan   TRENDS IN PLANT SCIENCE

Regulation of formation of volatile compounds of tea (Camellia sinensis) leaves by single light wavelength

(2015) Xiumin Fu et al.   Scientific Reports

Long Non-coding RNAs and Their Biological Roles in Plants

(2015) Xue Liu et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Genome-Wide Identification, Characterization and Evolutionary Analysis of Long Intergenic Noncoding RNAs in Cucumber

(2015) Zhiqiang Hao et al.   PLoS One

Genome-wide analysis of tomato long non-coding RNAs and identification as endogenous target mimic for microRNA in response to TYLCV infection

(2015) Jinyan Wang et al.   Scientific Reports

RNA regulatory networks in animals and plants: a long noncoding RNA perspective

(2014) Y. Bai et al.   Briefings in Functional Genomics

Genome-wide identification of novel long non-coding RNAs in Populus tomentosa tension wood, opposite wood and normal wood xylem by RNA-seq

(2014) Jinhui Chen et al.   PLANTA

Arabidopsis noncoding RNA mediates control of photomorphogenesis by red light

(2014) Y. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide discovery and characterization of maize long non-coding RNAs

(2014) Lin Li et al.   GENOME BIOLOGY

Jasmonates: biosynthesis, perception, signal transduction and action in plant stress response, growth and development. An update to the 2007 review in Annals of Botany

(2013) C. Wasternack et al.   ANNALS OF BOTANY

Network Analysis of the MVA and MEP Pathways for Isoprenoid Synthesis

(2013) Eva Vranová et al.   Annual Review of Plant Biology

Gene regulation by the act of long non-coding RNA transcription

(2013) Aleksandra E Kornienko et al.   BMC BIOLOGY

Recent studies of the volatile compounds in tea

(2013) Ziyin Yang et al.   FOOD RESEARCH INTERNATIONAL

Effect of extraction solvent on total phenol content, total flavonoid content, and antioxidant activity of Limnophila aromatica

(2013) Quy Diem Do et al.   JOURNAL OF FOOD AND DRUG ANALYSIS

Regulatory mechanisms of long noncoding RNAs in vertebrate central nervous system development and function

(2013) J.L. Knauss et al.   NEUROSCIENCE

Biosynthesis, function and metabolic engineering of plant volatile organic compounds

(2013) Natalia Dudareva et al.   NEW PHYTOLOGIST

Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts

(2013) Liang Sun et al.   NUCLEIC ACIDS RESEARCH

Widespread Long Noncoding RNAs as Endogenous Target Mimics for MicroRNAs in Plants

(2013) H.-J. Wu et al.   PLANT PHYSIOLOGY

Dynamic changes in catechin levels and catechin biosynthesis-related gene expression in albino tea plants (Camellia sinensis L.)

(2013) Ligui Xiong et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

The Yield of Essential Oils in Melaleuca alternifolia (Myrtaceae) Is Regulated through Transcript Abundance of Genes in the MEP Pathway

(2013) Hamish Webb et al.   PLoS One

Long noncoding RNAs in development and disease of the central nervous system

(2013) Shi-Yan Ng et al.   TRENDS IN GENETICS

Analysis of five rice 4-coumarate:coenzyme A ligase enzyme activity and stress response for potential roles in lignin and flavonoid biosynthesis in rice

(2012) Haiyan Sun et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Target mimics: an embedded layer of microRNA-involved gene regulatory networks in plants

(2012) Yijun Meng et al.   BMC GENOMICS

Genome-wide identification and characterization of novel genes involved in terpenoid biosynthesis in Salvia miltiorrhiza

(2012) Yimian Ma et al.   JOURNAL OF EXPERIMENTAL BOTANY

Long non-coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat

(2012) Claudia Carrieri et al.   NATURE

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Influence of shade on flavonoid biosynthesis in tea (Camellia sinensis (L.) O. Kuntze)

(2012) YunSheng Wang et al.   SCIENTIA HORTICULTURAE

Molecular Functions of Long Non-Coding RNAs in Plants

(2012) Qian-Hao Zhu et al.   Genes

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Next-generation transcriptome assembly

(2011) Jeffrey A. Martin et al.   NATURE REVIEWS GENETICS

The family of terpene synthases in plants: a mid-size family of genes for specialized metabolism that is highly diversified throughout the kingdom

(2011) Feng Chen et al.   PLANT JOURNAL

Long noncoding RNA: unveiling hidden layer of gene regulatory networks

(2011) Eun-Deok Kim et al.   TRENDS IN PLANT SCIENCE

TAPIR, a web server for the prediction of plant microRNA targets, including target mimics

(2010) Eric Bonnet et al.   BIOINFORMATICS

A Large Intergenic Noncoding RNA Induced by p53 Mediates Global Gene Repression in the p53 Response

(2010) Maite Huarte et al.   CELL

Production, Quality, and Biological Effects of Oolong Tea (Camellia sinensis)

(2010) Yu Long Chen et al.   FOOD REVIEWS INTERNATIONAL

Effect of Ultra-Violet B on Release of Volatiles in Tea Leaf

(2010) J. Jang et al.   INTERNATIONAL JOURNAL OF FOOD PROPERTIES

The Simultaneous Repression of CCR and CAD, Two Enzymes of the Lignin Biosynthetic Pathway, Results in Sterility and Dwarfism in Arabidopsis thaliana

(2010) Johanne Thévenin et al.   Molecular Plant

Lignin Biosynthesis and Structure

(2010) R. Vanholme et al.   PLANT PHYSIOLOGY

Vernalization-Mediated Epigenetic Silencing by a Long Intronic Noncoding RNA

(2010) J. B. Heo et al.   SCIENCE

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

Unravelling the regulatory mechanisms that modulate the MEP pathway in higher plants

(2009) E. Cordoba et al.   JOURNAL OF EXPERIMENTAL BOTANY

Molecular characterization of the Oncidium orchid HDR gene encoding 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase, the last step of the methylerythritol phosphate pathway

(2009) Jian-Zhi Huang et al.   PLANT CELL REPORTS

Lignin engineering

(2008) R VANHOLME et al.   CURRENT OPINION IN PLANT BIOLOGY

p-Coumarate:CoA ligase as a key gene in the yield of catechins in tea [Camellia sinensis (L.) O. Kuntze]

(2008) Arti Rani et al.   FUNCTIONAL & INTEGRATIVE GENOMICS