Genome-wide identification and characterization of novel lncRNAs in Ginkgo biloba

Cytological, physiological, and transcriptomic analyses of golden leaf coloration in Ginkgo biloba L

(2018) Wei-xing Li et al.   Horticulture Research

Whole transcriptome analysis of three leaf stages in two cultivars and one of their F1 hybrid of Camellia sinensis L. with differing EGCG content

(2017) Jinke Lin et al.   Tree Genetics & Genomes

Transcriptomic Analysis Reveals Mechanisms of Sterile and Fertile Flower Differentiation and Development in Viburnum macrocephalum f. keteleeri

(2017) Zhaogeng Lu et al.   Frontiers in Plant Science

Genome-wide identification and functional prediction of cold and/or drought-responsive lncRNAs in cassava

(2017) Shuxia Li et al.   Scientific Reports

Genome-wide identification and functional prediction of nitrogen-responsive intergenic and intronic long non-coding RNAs in maize (Zea mays L.)

(2016) Yuanda Lv et al.   BMC GENOMICS

Population genomic analysis of gibberellin-responsive long non-coding RNAs inPopulus

(2016) Jiaxing Tian et al.   JOURNAL OF EXPERIMENTAL BOTANY

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

(2016) Mihaela Pertea et al.   Nature Protocols

Evolution to the rescue: using comparative genomics to understand long non-coding RNAs

(2016) Igor Ulitsky   NATURE REVIEWS GENETICS

Transcriptome analysis reveals long noncoding RNAs involved in fiber development in cotton (Gossypium arboreum)

(2016) Changsong Zou et al.   Science China-Life Sciences

Global comparative analysis of expressed genes in ovules and leaves of Ginkgo biloba L.

(2016) Li Wang et al.   Tree Genetics & Genomes

Deep sequencing discovery and profiling of conserved and novel miRNAs in the ovule of Ginkgo biloba

(2016) Li Wang et al.   TREES-STRUCTURE AND FUNCTION

Genome-Wide Identification and Characterization of Long Non-Coding RNAs from Mulberry (Morus notabilis) RNA-seq Data

(2016) Xiaobo Song et al.   Genes

Draft genome of the living fossil Ginkgo biloba

(2016) Rui Guan et al.   GigaScience

Genome-wide long non-coding RNA screening, identification and characterization in a model microorganism Chlamydomonas reinhardtii

(2016) Hui Li et al.   Scientific Reports

Global identification and analysis of long non-coding RNAs in diploid strawberry Fragaria vesca during flower and fruit development

(2015) Chunying Kang et al.   BMC GENOMICS

Identification and characterization of long non-coding RNAs involved in osmotic and salt stress in Medicago truncatula using genome-wide high-throughput sequencing

(2015) Tian-Zuo Wang et al.   BMC PLANT BIOLOGY

RNA sequencing and functional analysis implicate the regulatory role of long non-coding RNAs in tomato fruit ripening

(2015) Benzhong Zhu et al.   JOURNAL OF EXPERIMENTAL BOTANY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Expression and diversification analysis reveals transposable elements play important roles in the origin of Lycopersicon-specific lncRNAs in tomato

(2015) Xin Wang et al.   NEW PHYTOLOGIST

Analysis of non-coding transcriptome in rice and maize uncovers roles of conserved lncRNAs associated with agriculture traits

(2015) Huan Wang et al.   PLANT JOURNAL

Identification and characterization of microRNA expression in Ginkgo biloba L. leaves

(2015) Li Wang et al.   Tree Genetics & Genomes

The Landscape of long noncoding RNA classification

(2015) Georges St. Laurent et al.   TRENDS IN GENETICS

RNA-Seq Analysis of Rice Roots Reveals the Involvement of Post-Transcriptional Regulation in Response to Cadmium Stress

(2015) Fei He et al.   Frontiers in Plant Science

LncTar: a tool for predicting the RNA targets of long noncoding RNAs

(2014) Jianwei Li et al.   BRIEFINGS IN BIOINFORMATICS

Genome-wide identification and functional prediction of novel and drought-responsive lincRNAs in Populus trichocarpa

(2014) Peng Shuai et al.   JOURNAL OF EXPERIMENTAL BOTANY

Identification of mRNA-like non-coding RNAs and validation of a mighty one namedMARinPanax ginseng

(2014) Meizhen Wang et al.   Journal of Integrative Plant Biology

Characterization of stress-responsive lncRNAs inArabidopsis thalianaby integrating expression, epigenetic and structural features

(2014) Chao Di et al.   PLANT JOURNAL

Genome-wide identification of novel long non-coding RNAs in Populus tomentosa tension wood, opposite wood and normal wood xylem by RNA-seq

(2014) Jinhui Chen et al.   PLANTA

Identification of Maize Long Non-Coding RNAs Responsive to Drought Stress

(2014) Wei Zhang et al.   PLoS One

Genome-wide discovery and characterization of maize long non-coding RNAs

(2014) Lin Li et al.   GENOME BIOLOGY

Gene regulation by the act of long non-coding RNA transcription

(2013) Aleksandra E Kornienko et al.   BMC BIOLOGY

Epigenetic regulation by long noncoding RNAs in plants

(2013) Jae Bok Heo et al.   CHROMOSOME RESEARCH

Predicting long non-coding RNAs using RNA sequencing

(2013) Nicholas E. Ilott et al.   METHODS

Analysis of long non-coding RNAs produced by a specialized RNA polymerase in Arabidopsis thaliana

(2013) M. Jordan Rowley et al.   METHODS

The Norway spruce genome sequence and conifer genome evolution

(2013) Björn Nystedt et al.   NATURE

Long non-coding RNAs: new players in cell differentiation and development

(2013) Alessandro Fatica et al.   NATURE REVIEWS GENETICS

On the classification of long non-coding RNAs

(2013) Lina Ma et al.   RNA Biology

Comprehensive transcriptome analysis reveals novel genes involved in cardiac glycoside biosynthesis and mlncRNAs associated with secondary metabolism and stress response in Digitalis purpurea

(2012) Bin Wu et al.   BMC GENOMICS

Genome-Wide Analysis Uncovers Regulation of Long Intergenic Noncoding RNAs in Arabidopsis

(2012) J. Liu et al.   PLANT CELL

Ginkgo biloba Responds to Herbivory by Activating Early Signaling and Direct Defenses

(2012) Tapan Kumar Mohanta et al.   PLoS One

Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis

(2011) A. Pauli et al.   GENOME RESEARCH

Co-ordination of developmental processes by small RNAs during leaf development

(2010) A. Pulido et al.   JOURNAL OF EXPERIMENTAL BOTANY

Ectopic expression of miR396 suppressesGRFtarget gene expression and alters leaf growth inArabidopsis

(2009) Dongmei Liu et al.   PHYSIOLOGIA PLANTARUM