De novo transcriptome and phytochemical analyses reveal differentially expressed genes and characteristic secondary metabolites in the original oolong tea (Camellia sinensis) cultivar ‘Tieguanyin’ compared with cultivar ‘Benshan’

Metabolome and Transcriptome Sequencing Analysis Reveals Anthocyanin Metabolism in Pink Flowers of Anthocyanin-Rich Tea (Camellia sinensis)

(2019) Dylan Rothenberg et al.   MOLECULES

Unraveling a crosstalk regulatory network of temporal aroma accumulation in tea plant ( Camellia sinensis ) leaves by integration of metabolomics and transcriptomics

(2018) Qingshan Xu et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Formation mechanism of the oolong tea characteristic aroma during bruising and withering treatment

(2018) Ci-Jie Hu et al.   FOOD CHEMISTRY

Analysis of changes in volatile constituents and expression of genes involved in terpenoid metabolism in oleocellosis peel

(2018) Jiao Xie et al.   FOOD CHEMISTRY

Genome-wide identification of simple sequence repeats and development of polymorphic SSR markers for genetic studies in tea plant (Camellia sinensis)

(2018) Shengrui Liu et al.   MOLECULAR BREEDING

Draft genome sequence ofCamellia sinensisvar.sinensisprovides insights into the evolution of the tea genome and tea quality

(2018) Chaoling Wei et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Functional expression of plant-derived O -methyltransferase, flavanone 3-hydroxylase, and flavonol synthase in Corynebacterium glutamicum for production of pterostilbene, kaempferol, and quercetin

(2017) Nicolai Kallscheuer et al.   JOURNAL OF BIOTECHNOLOGY

Construction of fingerprinting for tea plant (Camellia sinensis) accessions using new genomic SSR markers

(2017) Shengrui Liu et al.   MOLECULAR BREEDING

The Tea Tree Genome Provides Insights into Tea Flavor and Independent Evolution of Caffeine Biosynthesis

(2017) En-Hua Xia et al.   Molecular Plant

Down-regulation of hydroxycinnamoyl CoA: shikimate hydroxycinnamoyl transferase, cinnamoyl CoA reductase, and cinnamyl alcohol dehydrogenase leads to lignin reduction in rice (Oryza sativa L. ssp. japonica cv. Nipponbare)

(2017) Sathish K. Ponniah et al.   Plant Biotechnology Reports

Map-based cloning of the pear gene MYB114 identifies an interaction with other transcription factors to coordinately regulate fruit anthocyanin biosynthesis

(2017) Gaifang Yao et al.   PLANT JOURNAL

Biochemical and Structural Analysis of Substrate Specificity of a Phenylalanine Ammonia-Lyase

(2017) Se-Young Jun et al.   PLANT PHYSIOLOGY

Functional Analysis of Two Flavanone-3-Hydroxylase Genes from Camellia sinensis: A Critical Role in Flavonoid Accumulation

(2017) Yahui Han et al.   Genes

Biochemical and transcriptomic analyses reveal different metabolite biosynthesis profiles among three color and developmental stages in ‘Anji Baicha’ (Camellia sinensis)

(2016) Chun-Fang Li et al.   BMC PLANT BIOLOGY

Complementary transcriptomic and proteomic analyses of a chlorophyll-deficient tea plant cultivar reveal multiple metabolic pathway changes

(2016) Lu Wang et al.   Journal of Proteomics

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Recent Advances in Volatiles of Teas

(2016) Xin-Qiang Zheng et al.   MOLECULES

PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants

(2016) Jinpu Jin et al.   NUCLEIC ACIDS RESEARCH

Characterization of the cinnamoyl-CoA reductase (CCR) gene family in Populus tomentosa reveals the enzymatic active sites and evolution of CCR

(2016) Nan Chao et al.   PLANTA

Anthocyanin biosynthesis during berry development in corvina grape

(2016) Gabriella De Lorenzis et al.   SCIENTIA HORTICULTURAE

Cloning, characterization and functional analysis of a flavonol synthase from Vaccinium corymbosum

(2016) Chunyu Zhang et al.   TREES-STRUCTURE AND FUNCTION

Phenylalanine ammonia-lyase gene families in cucurbit species: Structure, evolution, and expression

(2016) Chun-juan DONG et al.   Journal of Integrative Agriculture

Purple foliage coloration in tea (Camellia sinensis L.) arises from activation of the R2R3-MYB transcription factor CsAN1

(2016) Binmei Sun et al.   Scientific Reports

Global transcriptome and gene regulation network for secondary metabolite biosynthesis of tea plant (Camellia sinensis)

(2015) Chun-Fang Li et al.   BMC GENOMICS

Transcriptomic and phytochemical analysis of the biosynthesis of characteristic constituents in tea (Camellia sinensis) compared with oil tea (Camellia oleifera)

(2015) Yuling Tai et al.   BMC PLANT BIOLOGY

Differential expression of genes in purple-shoot tea tender leaves and mature leaves during leaf growth

(2015) Qiongqiong Zhou et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Photoperiod and shading regulate coloration and anthocyanin accumulation in the leaves of malus crabapples

(2015) Yanfen Lu et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Transcriptional control of flavonoid biosynthesis by MYB–bHLH–WDR complexes

(2015) Wenjia Xu et al.   TRENDS IN PLANT SCIENCE

Erratum: Relationship between gene expression and the accumulation of catechin during spring and autumn in tea plants (Camellia sinensis L.)

(2015) Min Liu et al.   Horticulture Research

De novo assembly and transcriptome characterization: novel insights into catechins biosynthesis in Camellia sinensis

(2014) Zhi-Jun Wu et al.   BMC PLANT BIOLOGY

Biochemical and transcriptome analyses of a novel chlorophyll-deficient chlorina tea plant cultivar

(2014) Lu Wang et al.   BMC PLANT BIOLOGY

Arabidopsis xanthine dehydrogenase mutants defective in purine degradation show a compromised protective response to drought and oxidative stress

(2014) Shunsuke Watanabe et al.   Plant Biotechnology

Mapped Clone and Functional Analysis of Leaf-Color Gene Ygl7 in a Rice Hybrid (Oryza sativa L. ssp. indica)

(2014) Xiao-juan Deng et al.   PLoS One

EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments

(2013) N. Leng et al.   BIOINFORMATICS

Analysis of the global transcriptome of longan (Dimocarpus longan Lour.) embryogenic callus using Illumina paired-end sequencing

(2013) Zhongxiong Lai et al.   BMC GENOMICS

HY5 regulates anthocyanin biosynthesis by inducing the transcriptional activation of the MYB75/PAP1 transcription factor inArabidopsis

(2013) Dong Ho Shin et al.   FEBS LETTERS

Recent studies of the volatile compounds in tea

(2013) Ziyin Yang et al.   FOOD RESEARCH INTERNATIONAL

Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions

(2013) Jaina Mistry et al.   NUCLEIC ACIDS RESEARCH

Transgenic Tobacco Overexpressing Tea cDNA Encoding Dihydroflavonol 4-Reductase and Anthocyanidin Reductase Induces Early Flowering and Provides Biotic Stress Tolerance

(2013) Vinay Kumar et al.   PLoS One

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

PAP1 transcription factor enhances production of phenylpropanoid and terpenoid scent compounds in rose flowers

(2012) Michal Moyal Ben Zvi et al.   NEW PHYTOLOGIST

High-throughput and parallel SNP discovery in selected candidate genes inEucalyptus camaldulensisusing Illumina NGS platform

(2012) Prasad S. Hendre et al.   PLANT BIOTECHNOLOGY JOURNAL

Transcriptome Sequencing and De Novo Analysis for Ma Bamboo (Dendrocalamus latiflorus Munro) Using the Illumina Platform

(2012) Mingying Liu et al.   PLoS One

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds

(2011) Cheng-Ying Shi et al.   BMC GENOMICS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases

(2011) Chen Xie et al.   NUCLEIC ACIDS RESEARCH

RNA interference-mediated suppression of xanthine dehydrogenase reveals the role of purine metabolism in drought tolerance in Arabidopsis

(2010) Shunsuke Watanabe et al.   FEBS LETTERS

Tea caffeine: Metabolism, functions, and reduction strategies

(2010) Prashant Mohanpuria et al.   FOOD SCIENCE AND BIOTECHNOLOGY

Crystal Structure and Catalytic Mechanism of Leucoanthocyanidin Reductase from Vitis vinifera

(2010) Chloé Maugé et al.   JOURNAL OF MOLECULAR BIOLOGY

Reference gene selection for qPCR analysis during somatic embryogenesis in longan tree

(2010) Y.L. Lin et al.   PLANT SCIENCE

Caffeine Biosynthesis and Degradation in Tea [Camellia sinensis (L.) O. Kuntze] is under Developmental and Seasonal Regulation

(2009) Prashant Mohanpuria et al.   MOLECULAR BIOTECHNOLOGY

Phenylpropanoid Biosynthesis

(2009) Thomas Vogt   Molecular Plant

Evaluation of next generation sequencing platforms for population targeted sequencing studies

(2009) Olivier Harismendy et al.   GENOME BIOLOGY

Caffeine in Chiang Rai tea infusions: Effects of tea variety, type, leaf form, and infusion conditions

(2008) Siripat Suteerapataranon et al.   FOOD CHEMISTRY

Effects of Anthocyanin and Carotenoid Combinations on Foliage and Immature Fruit Color of Capsicum annuum L.

(2008) Gordon J. Lightbourn et al.   JOURNAL OF HEREDITY

Molecular cloning, expression and characterization of a phenylalanine ammonia-lyase gene (SmPAL1) from Salvia miltiorrhiza

(2008) Jie Song et al.   MOLECULAR BIOLOGY REPORTS

Regulation of the anthocyanin biosynthetic pathway by the TTG1/bHLH/Myb transcriptional complex in Arabidopsis seedlings

(2008) Antonio Gonzalez et al.   PLANT JOURNAL

Structure and function of enzymes involved in the biosynthesis of phenylpropanoids

(2008) J.-L. Ferrer et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Leucoanthocyanidin reductase and anthocyanidin reductase gene expression and activity in flowers, young berries and skins of Vitis vinifera L. cv. Cabernet-Sauvignon during development

(2008) Séverine Gagné et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY