Comparative genomics reveals complex natural product biosynthesis capacities and carbon metabolism across host‐associated and free‐living Aquimarina ( Bacteroidetes, Flavobacteriaceae ) species
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Title
Comparative genomics reveals complex natural product biosynthesis capacities and carbon metabolism across host‐associated and free‐living
Aquimarina
(
Bacteroidetes, Flavobacteriaceae
) species
Authors
Keywords
-
Journal
ENVIRONMENTAL MICROBIOLOGY
Volume -, Issue -, Pages -
Publisher
Wiley
Online
2019-07-18
DOI
10.1111/1462-2920.14747
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Note: Only part of the references are listed.- Genomic blueprints of sponge-prokaryote symbiosis are shared by low abundant and cultivatable Alphaproteobacteria
- (2019) Elham Karimi et al. Scientific Reports
- Novel insights from uncultivated genomes of the global human gut microbiome
- (2019) Stephen Nayfach et al. NATURE
- Comparative genome analysis provides novel insight into the interaction of Aquimarina sp. AD1, BL5 and AD10 with their macroalgal host
- (2019) Jennifer Hudson et al. Marine Genomics
- Aquimarina sediminis sp. nov., isolated from coastal sediment
- (2018) Nan-Nan Wang et al. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY
- Detecting signatures of a sponge-associated lifestyle in bacterial genomes
- (2018) Cristina Díez-Vives et al. Environmental Microbiology Reports
- Novel Type III Polyketide Synthases Biosynthesize Methylated Polyketides in Mycobacterium marinum
- (2018) Amreesh Parvez et al. Scientific Reports
- Computational Genomics of Specialized Metabolism: from Natural Product Discovery to Microbiome Ecology
- (2018) Marnix H. Medema mSystems
- Adaptive mechanisms that provide competitive advantages to marine bacteroidetes during microalgal blooms
- (2018) Frank Unfried et al. ISME Journal
- Bioactive Secondary Metabolites from Octocoral-Associated Microbes—New Chances for Blue Growth
- (2018) Inês Raimundo et al. Marine Drugs
- Type 9 secretion system structures reveal a new protein transport mechanism
- (2018) Frédéric Lauber et al. NATURE
- antiSMASH 4.0—improvements in chemistry prediction and gene cluster boundary identification
- (2017) Kai Blin et al. NUCLEIC ACIDS RESEARCH
- Comparative Metagenomics Reveals the Distinctive Adaptive Features of the Spongia officinalis Endosymbiotic Consortium
- (2017) Elham Karimi et al. Frontiers in Microbiology
- Microbial Degradation of Lobster Shells to Extract Chitin Derivatives for Plant Disease Management
- (2017) Gayathri Ilangumaran et al. Frontiers in Microbiology
- Multiple opportunistic pathogens can cause a bleaching disease in the red seaweed Delisea pulchra
- (2016) Vipra Kumar et al. ENVIRONMENTAL MICROBIOLOGY
- Aquimarina aggregata sp. nov., isolated from seawater
- (2016) Yan Wang et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
- (2016) Sudhir Kumar et al. MOLECULAR BIOLOGY AND EVOLUTION
- EDGAR 2.0: an enhanced software platform for comparative gene content analyses
- (2016) Jochen Blom et al. NUCLEIC ACIDS RESEARCH
- Sample Processing Impacts the Viability and Cultivability of the Sponge Microbiome
- (2016) Ana I. S. Esteves et al. Frontiers in Microbiology
- The Pharmacological Potential of Non-ribosomal Peptides from Marine Sponge and Tunicates
- (2016) Shivankar Agrawal et al. Frontiers in Pharmacology
- JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison
- (2015) Michael Richter et al. BIOINFORMATICS
- Pan-genomic analysis to redefine species and subspecies based on quantum discontinuous variation: the Klebsiella paradigm
- (2015) Aurélia Caputo et al. Biology Direct
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- Chitin and Chitosan Preparation from Marine Sources. Structure, Properties and Applications
- (2015) Islem Younes et al. Marine Drugs
- Minimum Information about a Biosynthetic Gene cluster
- (2015) Marnix H Medema et al. Nature Chemical Biology
- Database resources of the National Center for Biotechnology Information
- (2015) NUCLEIC ACIDS RESEARCH
- Lifestyle Evolution in Cyanobacterial Symbionts of Sponges
- (2015) Ilia Burgsdorf et al. mBio
- Targeted metagenomics as a tool to tap into marine natural product diversity for the discovery and production of drug candidates
- (2015) Marla Trindade et al. Frontiers in Microbiology
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- (2014) Guizhen Li et al. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY
- STAMP: statistical analysis of taxonomic and functional profiles
- (2014) Donovan H. Parks et al. BIOINFORMATICS
- Insights into Secondary Metabolism from a Global Analysis of Prokaryotic Biosynthetic Gene Clusters
- (2014) Peter Cimermancic et al. CELL
- Marine Microbial Metagenomics: From Individual to the Environment
- (2014) Ching-Hung Tseng et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
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- (2014) Z. Zhang et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes
- (2014) M. Kim et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
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- (2014) Micheal C. Wilson et al. NATURE
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- (2014) Hang Yang et al. Frontiers in Microbiology
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- (2013) Alexander J. Mann et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
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- (2013) Jan P Meier-Kolthoff et al. BMC BIOINFORMATICS
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- (2013) Ana I.S. Esteves et al. FEMS MICROBIOLOGY ECOLOGY
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- (2013) T. Yu et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
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- (2013) J. Kennedy et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Ecology of marine Bacteroidetes: a comparative genomics approach
- (2013) Beatriz Fernández-Gómez et al. ISME Journal
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- (2013) S. S. Kharade et al. JOURNAL OF BACTERIOLOGY
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- (2013) Mary T. H. D. Nguyen et al. MOLECULAR ECOLOGY
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- (2012) Robert A. Quinn et al. JOURNAL OF SHELLFISH RESEARCH
- Ecology and Physics of Bacterial Chemotaxis in the Ocean
- (2012) Roman Stocker et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Bacteriocins — a viable alternative to antibiotics?
- (2012) Paul D. Cotter et al. NATURE REVIEWS MICROBIOLOGY
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- (2011) Wen-Ming Chen et al. ARCHIVES OF MICROBIOLOGY
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- (2011) Sitao Wu et al. BMC GENOMICS
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- (2011) Wen Ming Chen et al. ENZYME AND MICROBIAL TECHNOLOGY
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- (2011) B. Lin et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Extreme genome reduction in symbiotic bacteria
- (2011) John P. McCutcheon et al. NATURE REVIEWS MICROBIOLOGY
- Accelerated Profile HMM Searches
- (2011) Sean R. Eddy PLoS Computational Biology
- Aquimarina spongiae sp. nov., isolated from marine sponge Halichondria oshoro
- (2010) B.-J. Yoon et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Functional genomic signatures of sponge bacteria reveal unique and shared features of symbiosis
- (2010) Torsten Thomas et al. ISME Journal
- Survival of Escherichia coli in the environment: fundamental and public health aspects
- (2010) Jan Dirk van Elsas et al. ISME Journal
- Aquimarina macrocephali sp. nov., isolated from sediment adjacent to sperm whale carcasses
- (2009) M. Miyazaki et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Shifting the genomic gold standard for the prokaryotic species definition
- (2009) Michael Richter et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths
- (2009) Marie Touchon et al. PLoS Genetics
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