Accelerated Profile HMM Searches

Hidden Markov model speed heuristic and iterative HMM search procedure

(2010) L Steven Johnson et al.   BMC BIOINFORMATICS

Ongoing and future developments at the Universal Protein Resource

(2010)   NUCLEIC ACIDS RESEARCH

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

The Pfam protein families database

(2009) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Designing Patterns and Profiles for Faster HMM Search

(2008) Yanni Sun et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

InterPro: the integrative protein signature database

(2008) S. Hunter et al.   NUCLEIC ACIDS RESEARCH

Exploring the viability of the Cell Broadband Engine for bioinformatics applications

(2008) Vipin Sachdeva et al.   PARALLEL COMPUTING

A Probabilistic Model of Local Sequence Alignment That Simplifies Statistical Significance Estimation

(2008) Sean R. Eddy   PLoS Computational Biology