Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes
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Title
Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes
Authors
Keywords
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Journal
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
Volume 64, Issue Pt 2, Pages 346-351
Publisher
Microbiology Society
Online
2014-02-06
DOI
10.1099/ijs.0.059774-0
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Note: Only part of the references are listed.- Genome sequence-based species delimitation with confidence intervals and improved distance functions
- (2013) Jan P Meier-Kolthoff et al. BMC BIOINFORMATICS
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- (2013) Christopher J Grim et al. BMC GENOMICS
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- (2013) Daniel R Mende et al. NATURE METHODS
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- (2012) Jacqueline Z-M Chan et al. BMC MICROBIOLOGY
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- (2011) Hana Yi et al. FEMS MICROBIOLOGY LETTERS
- Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species
- (2011) O.-S. Kim et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
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- (2011) Daniel McDonald et al. ISME Journal
- rRNASelector: A computer program for selecting ribosomal RNA encoding sequences from metagenomic and metatranscriptomic shotgun libraries
- (2011) Jae-Hak Lee et al. JOURNAL OF MICROBIOLOGY
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- (2011) Jesse Read et al. MACHINE LEARNING
- Diversity of 16S rRNA Genes within Individual Prokaryotic Genomes
- (2010) A. Y. Pei et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Comparative genomic analysis reveals evidence of two novel Vibrio species closely related to V. cholerae
- (2010) Bradd J Haley et al. BMC MICROBIOLOGY
- Notes on the characterization of prokaryote strains for taxonomic purposes
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- Shifting the genomic gold standard for the prokaryotic species definition
- (2009) Michael Richter et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Intraspecific polymorphism of 16S rRNA genes in two halophilic archaeal genera, Haloarcula and Halomicrobium
- (2008) Heng-Lin Cui et al. EXTREMOPHILES
- A Genomic Distance Based on MUM Indicates Discontinuity between Most Bacterial Species and Genera
- (2008) M. Deloger et al. JOURNAL OF BACTERIOLOGY
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