Haem iron reshapes colonic luminal environment: impact on mucosal homeostasis and microbiome through aldehyde formation

DIABLO: an integrative approach for identifying key molecular drivers from multi-omic assays

(2019) Amrit Singh et al.   BIOINFORMATICS

Molecular mechanisms and in vitro antioxidant effects of Lactobacillus plantarum MA2

(2017) Wei Tang et al.   FOOD CHEMISTRY

mixOmics: An R package for ‘omics feature selection and multiple data integration

(2017) Florian Rohart et al.   PLoS Computational Biology

Dietary Heme Induces Gut Dysbiosis, Aggravates Colitis, and Potentiates the Development of Adenomas in Mice

(2017) Marco Constante et al.   Frontiers in Microbiology

Untargeted metabolomics of colonic digests reveals kynurenine pathway metabolites, dityrosine and 3-dehydroxycarnitine as red versus white meat discriminating metabolites

(2017) Caroline Rombouts et al.   Scientific Reports

Heme Iron Intake, Dietary Antioxidant Capacity, and Risk of Colorectal Adenomas in a Large Cohort Study of French Women

(2016) N. Bastide et al.   CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION

Red meat and colorectal cancer: Nrf2-dependent antioxidant response contributes to the resistance of preneoplastic colon cells to fecal water of hemoglobin- and beef-fed rats

(2016) Reggie Surya et al.   CARCINOGENESIS

Impact of red meat consumption on the metabolome of rats

(2016) Louise M. A. Jakobsen et al.   MOLECULAR NUTRITION & FOOD RESEARCH

Mechanisms of inflammation-driven bacterial dysbiosis in the gut

(2016) M Y Zeng et al.   Mucosal Immunology

Clostridium difficile colitis: pathogenesis and host defence

(2016) Michael C. Abt et al.   NATURE REVIEWS MICROBIOLOGY

MixMC: A Multivariate Statistical Framework to Gain Insight into Microbial Communities

(2016) Kim-Anh Lê Cao et al.   PLoS One

A Central Role for Heme Iron in Colon Carcinogenesis Associated with Red Meat Intake

(2015) N. M. Bastide et al.   CANCER RESEARCH

Protective effect of Lactobacillus plantarum 21, a probiotic on trinitrobenzenesulfonic acid-induced ulcerative colitis in rats

(2015) C.S.V. Satish Kumar et al.   INTERNATIONAL IMMUNOPHARMACOLOGY

Carcinogenicity of consumption of red and processed meat

(2015) Véronique Bouvard et al.   LANCET ONCOLOGY

Gut microbiota facilitates dietary heme-induced epithelial hyperproliferation by opening the mucus barrier in colon

(2015) Noortje Ijssennagger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Symbiotic Human Gut Bacteria with Variable Metabolic Priorities for Host Mucosal Glycans

(2015) N. A. Pudlo et al.   mBio

Gut microbiome development along the colorectal adenoma–carcinoma sequence

(2015) Qiang Feng et al.   Nature Communications

Insights into the Role of Erysipelotrichaceae in the Human Host

(2015) Nadeem O. Kaakoush   Frontiers in Cellular and Infection Microbiology

Meat, dairy, and cancer

(2014) Zaynah Abid et al.   AMERICAN JOURNAL OF CLINICAL NUTRITION

High-protein diet modifies colonic microbiota and luminal environment but not colonocyte metabolism in the rat model: the increased luminal bulk connection

(2014) Xinxin Liu et al.   AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY

Inflammation-associated Adherent-invasive Escherichia coli Are Enriched in Pathways for Use of Propanediol and Iron and M-cell Translocation

(2014) Belgin Dogan et al.   INFLAMMATORY BOWEL DISEASES

The gut microbiota, bacterial metabolites and colorectal cancer

(2014) Petra Louis et al.   NATURE REVIEWS MICROBIOLOGY

Antibiotic Suppression of Intestinal Microbiota Reduces Heme-Induced Lipoperoxidation Associated with Colon Carcinogenesis in Rats

(2014) O. C. B. Martin et al.   NUTRITION AND CANCER-AN INTERNATIONAL JOURNAL

Fat Content and Nitrite-Curing Influence the Formation of Oxidation Products and NOC-Specific DNA Adducts during In Vitro Digestion of Meat

(2014) Thomas Van Hecke et al.   PLoS One

Links between diet, gut microbiota composition and gut metabolism

(2014) Harry J. Flint et al.   PROCEEDINGS OF THE NUTRITION SOCIETY

Inflammation and colorectal cancer, when microbiota-host mutualism breaks

(2014) Marco Candela   WORLD JOURNAL OF GASTROENTEROLOGY

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

Swarm: robust and fast clustering method for amplicon-based studies

(2014) Frédéric Mahé et al.   PeerJ

Structure of the gut microbiome following colonization with human feces determines colonic tumor burden

(2014) Nielson T Baxter et al.   Microbiome

Calcium and α-tocopherol suppress cured-meat promotion of chemically induced colon carcinogenesis in rats and reduce associated biomarkers in human volunteers

(2013) Fabrice HF Pierre et al.   AMERICAN JOURNAL OF CLINICAL NUTRITION

The Role of Cell Surface Architecture of Lactobacilli in Host-Microbe Interactions in the Gastrointestinal Tract

(2013) Ranjita Sengupta et al.   MEDIATORS OF INFLAMMATION

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

Intestinal microbiota metabolism of l-carnitine, a nutrient in red meat, promotes atherosclerosis

(2013) Robert A Koeth et al.   NATURE MEDICINE

Protective and worsening peripheral nociceptin/orphanin FQ receptor-mediated effect in a rat model of experimental colitis

(2013) Carla Petrella et al.   PHARMACOLOGICAL RESEARCH

Commensal Clostridia: leading players in the maintenance of gut homeostasis

(2013) Loris R Lopetuso et al.   Gut Pathogens

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

Dietary Heme Alters Microbiota and Mucosa of Mouse Colon without Functional Changes in Host-Microbe Cross-Talk

(2012) Noortje IJssennagger et al.   PLoS One

Stobadine attenuates impairment of an intestinal barrier model caused by 4-hydroxynonenal

(2012) Marina Cindric et al.   TOXICOLOGY IN VITRO

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Sparse PLS discriminant analysis: biologically relevant feature selection and graphical displays for multiclass problems

(2011) Kim-Anh Lê Cao et al.   BMC BIOINFORMATICS

Heme Iron from Meat and Risk of Colorectal Cancer: A Meta-analysis and a Review of the Mechanisms Involved

(2011) N. M. Bastide et al.   Cancer Prevention Research

Red meat intake-induced increases in fecal water genotoxicity correlate with pro-carcinogenic gene expression changes in the human colon

(2011) Dennie G.A.J. Hebels et al.   FOOD AND CHEMICAL TOXICOLOGY

Dietary Micronutrient Intakes Are Associated with Markers of Inflammation but Not with Markers of Subclinical Atherosclerosis

(2011) Marcia C. C. de Oliveira Otto et al.   JOURNAL OF NUTRITION

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Dextran sulfate sodium and 2,4,6-trinitrobenzene sulfonic acid induce lipid peroxidation by the proliferation of intestinal gram-negative bacteria in mice

(2010) In-Ah Lee et al.   Journal of Inflammation-London

Recursive Segment-Wise Peak Alignment of Biological1H NMR Spectra for Improved Metabolic Biomarker Recovery

(2009) Kirill A. Veselkov et al.   ANALYTICAL CHEMISTRY

integrOmics: an R package to unravel relationships between two omics datasets

(2009) Kim-Anh Lê Cao et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS