The cellular landscape of mid-size noncoding RNA

Recent advances in microRNA detection

(2018) Yongqiang Cheng et al.   ANALYST

tRNA dynamics between the nucleus, cytoplasm and mitochondrial surface: Location, location, location

(2018) Kunal Chatterjee et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Modifications in small nuclear RNAs and their roles in spliceosome assembly and function

(2018) Markus T. Bohnsack et al.   BIOLOGICAL CHEMISTRY

Roles of tRNA-derived fragments in human cancers

(2018) Chunxiao Sun et al.   CANCER LETTERS

An Evaluation of Function of Multicopy Noncoding RNAs in Mammals Using ENCODE/FANTOM Data and Comparative Genomics

(2018) Marc P Hoeppner et al.   MOLECULAR BIOLOGY AND EVOLUTION

The life of U6 small nuclear RNA, from cradle to grave

(2018) Allison L. Didychuk et al.   RNA

Simultaneous sequencing of coding and noncoding RNA reveals a human transcriptome dominated by a small number of highly expressed noncoding genes

(2018) Vincent Boivin et al.   RNA

Protein coding genes as hosts for noncoding RNA expression

(2018) Vincent Boivin et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Processing and roles of snoRNA-ended long noncoding RNAs

(2018) Yu-Hang Xing et al.   CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY

Transfer RNA-derived fragments and tRNA halves: biogenesis, biological functions and their roles in diseases

(2018) Yijing Shen et al.   JOURNAL OF MOLECULAR MEDICINE-JMM

Long Non-coding RNA Structure and Function: Is There a Link?

(2018) Anna Zampetaki et al.   Frontiers in Physiology

Circulating pancreatic cancer exosomal RNAs for detection of pancreatic cancer

(2018) Tatsuya Kitagawa et al.   Molecular Oncology

Small Nucleolar Noncoding RNA SNORA23, Up-Regulated in Human Pancreatic Ductal Adenocarcinoma, Regulates Expression of Spectrin Repeat-Containing Nuclear Envelope 2 to Promote Growth and Metastasis of Xenograft Tumors in Mice

(2017) Lin Cui et al.   GASTROENTEROLOGY

Structural characterization of human aminoacyl-tRNA synthetases for translational and nontranslational functions

(2017) Pengfei Fang et al.   METHODS

U1 snRNP telescripting regulates a size–function-stratified human genome

(2017) Jung-Min Oh et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

A snoRNA modulates mRNA 3′ end processing and regulates the expression of a subset of mRNAs

(2017) Chunliu Huang et al.   NUCLEIC ACIDS RESEARCH

Protein-only RNase P function in Escherichia coli: viability, processing defects and differences between PRORP isoenzymes

(2017) Markus Gößringer et al.   NUCLEIC ACIDS RESEARCH

Minimal and RNA-free RNase P inAquifex aeolicus

(2017) Astrid I. Nickel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

snoRNAs associate with mRNA 3′ processing complex: New wine in old bottles

(2017) Junjie Shi et al.   RNA Biology

U1 snRNP telescripting regulates a size–function-stratified human genome

(2017) Jung-Min Oh et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Characterizing Expression and Processing of Precursor and Mature Human tRNAs by Hydro-tRNAseq and PAR-CLIP

(2017) Tasos Gogakos et al.   Cell Reports

Regulation of expression of human RNA polymerase II-transcribed snRNA genes

(2017) Joana Guiro et al.   Open Biology

Discovery and function of transfer RNA-derived fragments and their role in disease

(2017) Ana Raquel Soares et al.   Wiley Interdisciplinary Reviews-RNA

tRNA biology in the omics era: Stress signalling dynamics and cancer progression

(2016) Andrea Orioli   BIOESSAYS

Modulated Expression of Specific tRNAs Drives Gene Expression and Cancer Progression

(2016) Hani Goodarzi et al.   CELL

RNA Regulation of Lipotoxicity and Metabolic Stress

(2016) George Caputa et al.   DIABETES

Non-canonical roles of tRNAs and tRNA mimics in bacterial cell biology

(2016) Assaf Katz et al.   MOLECULAR MICROBIOLOGY

Unique features of long non-coding RNA biogenesis and function

(2016) Jeffrey J. Quinn et al.   NATURE REVIEWS GENETICS

An updated human snoRNAome

(2016) Hadi Jorjani et al.   NUCLEIC ACIDS RESEARCH

RNAcentral: a comprehensive database of non-coding RNA sequences

(2016)   NUCLEIC ACIDS RESEARCH

Dual function of C/D box small nucleolar RNAs in rRNA modification and alternative pre-mRNA splicing

(2016) Marina Falaleeva et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Human intron-encoded AluACA RNAs and telomerase RNA share a common element promoting RNA accumulation

(2016) Amandine Ketele et al.   RNA Biology

Evolutionary perspectives of telomerase RNA structure and function

(2016) Joshua D. Podlevsky et al.   RNA Biology

Assembly and trafficking of box C/D and H/ACA snoRNPs

(2016) Séverine Massenet et al.   RNA Biology

The emerging biology of RNA post-transcriptional modifications

(2016) Sigrid Nachtergaele et al.   RNA Biology

The human box C/D snoRNAs U3 and U8 are required for pre-rRNA processing and tumorigenesis

(2016) Jean-Louis Langhendries et al.   Oncotarget

Genome recoding by tRNA modifications

(2016) Francesca Tuorto et al.   Open Biology

Tissue- and Time-Specific Expression of Otherwise Identical tRNA Genes

(2016) Dror Sagi et al.   PLoS Genetics

The physiology and habitat of the last universal common ancestor

(2016) Madeline C. Weiss et al.   Nature Microbiology

Mechanisms and Regulation of Alternative Pre-mRNA Splicing

(2015) Yeon Lee et al.   Annual Review of Biochemistry

What do we know about ribosomal RNA methylation in Escherichia coli?

(2015) O.V. Sergeeva et al.   BIOCHIMIE

Comparison of GENCODE and RefSeq gene annotation and the impact of reference geneset on variant effect prediction

(2015) Adam Frankish et al.   BMC GENOMICS

U6 snRNA Pseudogenes: Markers of Retrotransposition Dynamics in Mammals

(2015) Aurélien J. Doucet et al.   MOLECULAR BIOLOGY AND EVOLUTION

GtRNAdb 2.0: an expanded database of transfer RNA genes identified in complete and draft genomes

(2015) Patricia P. Chan et al.   NUCLEIC ACIDS RESEARCH

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation

(2015) Nuala A. O'Leary et al.   NUCLEIC ACIDS RESEARCH

NONCODE 2016: an informative and valuable data source of long non-coding RNAs

(2015) Yi Zhao et al.   NUCLEIC ACIDS RESEARCH

DASHR: database of small human noncoding RNAs

(2015) Yuk Yee Leung et al.   NUCLEIC ACIDS RESEARCH

Potential role for snoRNAs in PKR activation during metabolic stress

(2015) Osama A. Youssef et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

C/D-box snoRNA-derived RNA production is associated with malignant transformation and metastatic progression in prostate cancer

(2015) Elena S. Martens-Uzunova et al.   Oncotarget

Analysis of small nucleolar RNAs in sputum for lung cancer diagnosis

(2015) Jian Su et al.   Oncotarget

Unveiling the hidden function of long non-coding RNA by identifying its major partner-protein

(2015) Yongfang Yang et al.   Cell and Bioscience

The emerging landscape of small nucleolar RNAs in cell biology

(2015) Fabien Dupuis-Sandoval et al.   Wiley Interdisciplinary Reviews-RNA

Non-coding RNA: what is functional and what is junk?

(2015) Alexander F. Palazzo et al.   Frontiers in Genetics

tRNA fragments in human health and disease

(2014) Paul Anderson et al.   FEBS LETTERS

Small nucleolar RNA signatures of lung tumor-initiating cells

(2014) Kaiissar Mannoor et al.   Molecular Cancer

lncRNAdb v2.0: expanding the reference database for functional long noncoding RNAs

(2014) Xiu Cheng Quek et al.   NUCLEIC ACIDS RESEARCH

Identification of discrete classes of small nucleolar RNA featuring different ends and RNA binding protein dependency

(2014) Gabrielle Deschamps-Francoeur et al.   NUCLEIC ACIDS RESEARCH

Multiplicity of 5′ Cap Structures Present on Short RNAs

(2014) Rehab F. Abdelhamid et al.   PLoS One

Role of tRNA modifications in human diseases

(2014) Adrian Gabriel Torres et al.   TRENDS IN MOLECULAR MEDICINE

Origin of Spliceosomal Introns and Alternative Splicing

(2014) M. Irimia et al.   Cold Spring Harbor Perspectives in Biology

Developmental Analysis of Spliceosomal snRNA Isoform Expression

(2014) Zhipeng Lu et al.   G3-Genes Genomes Genetics

To be or not to be a piRNA: genomic origin and processing of piRNAs

(2014) Adrien Le Thomas et al.   GENOME BIOLOGY

Mutations in chronic lymphocytic leukemia and how they affect therapy choice: focus on NOTCH1, SF3B1, and TP53

(2014) C. S. Zent et al.   Hematology-American Society of Hematology Education Program

SF3B1 mutations in chronic lymphocytic leukemia

(2013) Y. Wan et al.   BLOOD

Fungal Alternative Splicing is Associated with Multicellular Complexity and Virulence: A Genome-Wide Multi-Species Study

(2013) K. Grutzmann et al.   DNA RESEARCH

Small nucleolar RNAs and RNA-guided post-transcriptional modification

(2013) Lauren Lui et al.   Essays in Biochemistry

Role of small nuclear RNAs in eukaryotic gene expression

(2013) Saba Valadkhan et al.   Essays in Biochemistry

tRNA gene copy number variation in humans

(2013) James R. Iben et al.   GENE

Ribosome Biogenesis in the Yeast Saccharomyces cerevisiae

(2013) John L. Woolford et al.   GENETICS

Acquired Mutations That Affect Pre-mRNA Splicing in Hematologic Malignancies and Solid Tumors

(2013) L. M. Scott et al.   JNCI-Journal of the National Cancer Institute

Characterization of the interaction between protein Snu13p/15.5K and the Rsa1p/NUFIP factor and demonstration of its functional importance for snoRNP assembly

(2013) Benjamin Rothé et al.   NUCLEIC ACIDS RESEARCH

U6 RNA biogenesis and disease association

(2013) Seweryn Mroczek et al.   Wiley Interdisciplinary Reviews-RNA

An interplay between transcription, processing, and degradation determines tRNA levels in yeast

(2013) Dominika Wichtowska et al.   Wiley Interdisciplinary Reviews-RNA

Lives that introns lead after splicing

(2013) Jay R. Hesselberth   Wiley Interdisciplinary Reviews-RNA

Nuclear RNA surveillance: role of TRAMP in controlling exosome specificity

(2013) Karyn Schmidt et al.   Wiley Interdisciplinary Reviews-RNA

Minor introns are embedded molecular switches regulated by highly unstable U6atac snRNA

(2013) Ihab Younis et al.   eLife

Insights into snoRNA biogenesis and processing from PAR-CLIP of snoRNA core proteins and small RNA sequencing

(2013) Shivendra Kishore et al.   GENOME BIOLOGY

Biosynthesis and Function of Posttranscriptional Modifications of Transfer RNAs

(2012) Basma El Yacoubi et al.   Annual Review of Genetics

Processing of snoRNAs as a new source of regulatory non-coding RNAs

(2012) Marina Falaleeva et al.   BIOESSAYS

Origin and evolution of spliceosomal introns

(2012) Igor B Rogozin et al.   Biology Direct

Biologic and clinical significance of somatic mutations of SF3B1 in myeloid and lymphoid neoplasms

(2012) M. Cazzola et al.   BLOOD

Comparative genomics of eukaryotic small nucleolar RNAs reveals deep evolutionary ancestry amidst ongoing intragenomic mobility

(2012) Marc P Hoeppner et al.   BMC EVOLUTIONARY BIOLOGY

Structure, function and regulation of spliceosomal RNA helicases

(2012) Olivier Cordin et al.   CURRENT OPINION IN CELL BIOLOGY

Function of alternative splicing

(2012) Olga Kelemen et al.   GENE

Human intron-encoded Alu RNAs are processed and packaged into Wdr79-associated nucleoplasmic box H/ACA RNPs

(2012) B. E. Jady et al.   GENES & DEVELOPMENT

Differentially expressed, variant U1 snRNAs regulate gene expression in human cells

(2012) D. O'Reilly et al.   GENOME RESEARCH

GENCODE: The reference human genome annotation for The ENCODE Project

(2012) J. Harrow et al.   GENOME RESEARCH

Multiple myeloma–associated chromosomal translocation activates orphan snoRNA ACA11 to suppress oxidative stress

(2012) Liang Chu et al.   JOURNAL OF CLINICAL INVESTIGATION

Emerging roles of the spliceosomal machinery in myelodysplastic syndromes and other hematological disorders

(2012) V Visconte et al.   LEUKEMIA

Evolutionary conservation of codon optimality reveals hidden signatures of cotranslational folding

(2012) Sebastian Pechmann et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

The SNORD115 (H/MBII-52) and SNORD116 (H/MBII-85) gene clusters at the imprinted Prader-Willi locus generate canonical box C/D snoRNAs

(2012) M.-L. Bortolin-Cavaille et al.   NUCLEIC ACIDS RESEARCH

Evolutionarily divergent spliceosomal snRNAs and a conserved non-coding RNA processing motif in Giardia lamblia

(2012) Andrew J. Hudson et al.   NUCLEIC ACIDS RESEARCH

The common ancestral core of vertebrate and fungal telomerase RNAs

(2012) Xiaodong Qi et al.   NUCLEIC ACIDS RESEARCH

Human mitochondrial tRNA quality control in health and disease

(2012) Ruth Belostotsky et al.   RNA Biology

The significant other: splicing by the minor spliceosome

(2012) Janne J. Turunen et al.   Wiley Interdisciplinary Reviews-RNA

From snoRNA to miRNA: Dual function regulatory non-coding RNAs

(2011) Michelle S. Scott et al.   BIOCHIMIE

Small Nucleolar RNAs U32a, U33, and U35a Are Critical Mediators of Metabolic Stress

(2011) Carlos I. Michel et al.   Cell Metabolism

Structure of the Shq1-Cbf5-Nop10-Gar1 complex and implications for H/ACA RNP biogenesis and dyskeratosis congenita

(2011) Shuang Li et al.   EMBO JOURNAL

Human box C/D snoRNA processing conservation across multiple cell types

(2011) Michelle S. Scott et al.   NUCLEIC ACIDS RESEARCH

Small nucleolar RNA 42 acts as an oncogene in lung tumorigenesis

(2011) Y-P Mei et al.   ONCOGENE

A global picture of tRNA genes in plant genomes

(2011) Morgane Michaud et al.   PLANT JOURNAL

Structure of transfer RNAs: similarity and variability

(2011) Richard Giegé et al.   Wiley Interdisciplinary Reviews-RNA

7SK snRNA: a noncoding RNA that plays a major role in regulating eukaryotic transcription

(2011) B. Matija Peterlin et al.   Wiley Interdisciplinary Reviews-RNA

Biogenesis of the signal recognition particle

(2010) Eileen Leung et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Genomic organization of eukaryotic tRNAs

(2010) Clara Bermudez-Santana et al.   BMC GENOMICS

Defining the RNA polymerase III transcriptome: Genome-wide localization of the RNA polymerase III transcription machinery in human cells

(2010) D. Canella et al.   GENOME RESEARCH

The snoRNA MBII-52 (SNORD 115) is processed into smaller RNAs and regulates alternative splicing

(2010) Shivendra Kishore et al.   HUMAN MOLECULAR GENETICS

Analysis of Human Small Nucleolar RNAs (snoRNA) and the Development of snoRNA Modulator of Gene Expression Vectors

(2010) Motoharu Ono et al.   MOLECULAR BIOLOGY OF THE CELL

Small nucleolar RNA signatures as biomarkers for non-small-cell lung cancer

(2010) Jipei Liao et al.   Molecular Cancer

Archaeal/Eukaryal RNase P: subunits, functions and RNA diversification

(2010) Nayef Jarrous et al.   NUCLEIC ACIDS RESEARCH

Kinship in the SRP RNA family

(2010) Magnus Alm Rosenblad et al.   RNA Biology

Novel roles of U1 snRNP in alternative splicing regulation

(2010) Emanuele Buratti et al.   RNA Biology

Identification of novel ribonucleo-protein complexes from the brain-specific snoRNA MBII-52

(2010) Y. Soeno et al.   RNA

Of proteins and RNA: The RNase P/MRP family

(2010) O. Esakova et al.   RNA

The long and the short of noncoding RNAs

(2009) Christopher A Brosnan et al.   CURRENT OPINION IN CELL BIOLOGY

Eukaryotic snoRNAs: A paradigm for gene expression flexibility

(2009) Giorgio Dieci et al.   GENOMICS

Origin and evolution of the genetic code: The universal enigma

(2009) Eugene V. Koonin et al.   IUBMB LIFE

Implication of snoRNA U50 in human breast cancer

(2009) Xue-Yuan Dong et al.   Journal of Genetics and Genomics

Evolution of 7SK RNA and Its Protein Partners in Metazoa

(2009) M. Marz et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evolution of Vault RNAs

(2009) P. F. Stadler et al.   MOLECULAR BIOLOGY AND EVOLUTION

Small RNAs derived from snoRNAs

(2009) R. J. Taft et al.   RNA

Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs

(2009) C. Cole et al.   RNA

Transcriptional regulation of human small nuclear RNA genes

(2008) G JAWDEKAR et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

RNase P without RNA: Identification and Functional Reconstitution of the Human Mitochondrial tRNA Processing Enzyme

(2008) Johann Holzmann et al.   CELL

Evolution of Spliceosomal snRNA Genes in Metazoan Animals

(2008) Manuela Marz et al.   JOURNAL OF MOLECULAR EVOLUTION

tRNAdb 2009: compilation of tRNA sequences and tRNA genes

(2008) F. Juhling et al.   NUCLEIC ACIDS RESEARCH

Intronic noncoding RNAs and splicing

(2008) John W.S. Brown et al.   TRENDS IN PLANT SCIENCE